This SIOOBE happens reproducibly when trying to access
a repository containing Cygwin symlinks
Change-Id: I25f103fcc723bac7bfaaeee333a86f11627a92c7
Signed-off-by: Marc Strapetz <marc.strapetz@syntevo.com>
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Remove the assumption that the local repository is a file based one.
Change-Id: I8f10fe7a54e9fc07f2a23d7901e52b65aa570d45
Signed-off-by: Thomas Meyer <thomas.mey@web.de>
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Git barfs on these (and they don't make any sense), so we certainly
shouldn't write them.
Change-Id: I3faf8554a05f0fd147be2e63fbe55987d3f88099
Signed-off-by: David Turner <dturner@twosigma.com>
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Allow for higher concurrency on DfsBlockCache by adding a configuration
for number of estimated concurrent requests.
Change-Id: Ia65e58ecb2c459b6d9c9697a2f715d933270f7e6
Signed-off-by: Philipp Marx <smigfu@googlemail.com>
Adding a space before the unit ('g', 'm', 'k) causes git to fail with
the error:
fatal: bad numeric config value
Change-Id: I57f11d3a1cdcca4549858e773af1a2a80fc0369f
Signed-off-by: David Turner <dturner@twosigma.com>
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
The 'factory' field is lazy initialized in the detect() method.
According to FindBugs:
Because the compiler or processor may reorder instructions, threads
are not guaranteed to see a completely initialized object, if the
method can be called by multiple threads.
Fix this by declaring the member as 'volatile'.
Change-Id: Ib32663bb28c9564584256e01f625b4e7875e6223
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
To avoid that people try to "fix" it.
Change-Id: Ib4b35e357e4c068a17243ebd2d57b058c54d5834
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Earlier we tried to close the repository before removing it from the
cache, so close only reduced refcount but didn't close it.
Now that we no longer leak usage count on purpose and the usage count is
now ignored anyway, there is no longer a need to run the removal twice.
Change-Id: I8b62cec6d8a3e88c096d1f37a1f7f5a5066c90a0
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
If the repository close method was called twice (or more) for one open,
the usage count became negative and the repository was never be evicted
from the cache because the method checking if repository is expired was
not considering negative usage count.
Change-Id: I18a80c415c54c37d1b9def2b311ff2d0afa455ca
Signed-off-by: Hugo Arès <hugo.ares@ericsson.com>
Symlinks on MacOS are written as UTF-8 NFD, but
readSymbolicLink().toString() converts to NFC with potentially fewer
bytes. May occur in particular if the link target has non-ASCII
characters for which the NFC and NFD encodings differ. This may lead
to an EOFException: Short read of block.
This causes all kinds of weird effects in EGit, ranging from failing
rebases (which report the exception to the user) to EGit decorations in
the navigator silently disappearing (and never coming back).
* Rename readContentAsNormalizedString() to readSymlinkTarget() as it's
called only for symlinks. Also make it protected.
* Fix by allowing the read to succeed even if less than the expected
number of bytes are returned by the entry's input stream.
* Override in FileTreeIterator to use fs.readSymlink() directly.
Includes a new MacOS-only test.
Change-Id: I264c5972d67b1cbb1ed690580f5706e671b9affd
Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Spawn an ObjectReader from the ObjectInserter, so the flush can be
delayed at the end of the fetch.
Change-Id: I35fe8c8370c06c25262645202aec2b1318057c19
Signed-off-by: Zhen Chen <czhen@google.com>
The package-private method Repository::gitInternalSlash() is not
referenced from anywhere within the package.
Last uses were removed with
0f8743d4 "Remove deprecated Tree, TreeEntry, FileTreeEntry and friends"
6e9fdce9 "Kill GitIndex"
Signed-off-by: Rüdiger Herrmann <ruediger.herrmann@gmx.de>
Change-Id: I514bf684ad0da808f6523e9e46db9674a25e1fb5
CheckoutCommand was not returning updated and removed files in case of
an overall status of NONDELETED. That's status which occurs especially
on the Windows platform when Checkout wanted to delete files but the
filesystem doesn't allow this. The situation is more seldom on linux/mac
because open filehandles don't stop a deletion attempt and checkout
succeeds more often.
Change-Id: I4828008e58c09bd8f9edaf0f7eda0a79c629fb57
There was a bug when carrying over flags from a merge commit to its
non-first parents. The first parent of a merge commit was handled
differently and correct but the non-first parents are handled by a
recursive algorithm. Flags should be copied from the root merge commit
to parent-2, to grandparent-2, ... up to the limit of STACK_DEPTH==500
parents-levels. But the recursive algorithm was always copying only to
the direct parents of the merge commit and not the grand*-parents.
This seems to be no problem when commits are handled in a strict date
order because then copying only one level is no problem if children are
handled before parents. But when commits are not seperated anymore by
distinctive correct dates (e.g. because all commits have the same date)
then it may happen that a merge-parent is handled before the merge
commit and when dealing later with the merge commit one has to copy
flags down to more than one level
Bug: 501211
Change-Id: I2d79a7cf1e3bce21a490905ccd9d5e502d7b8421
There are already suppressions for the same warnings in other parts
of this class.
Change-Id: Ic3b45525c6c8200cba975d14c7650cedb4409a4d
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
UploadPackLogger is deprecated but will not be removed until
JGit version 5.0.
Suppress the unavoidable deprecation warnings on usages of the
interface that are kept for backwards compatibility.
Add a TODO so that we don't forget to remove it in 5.0.
Change-Id: Id248002b9bdf23db192427196d54c722a012106c
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Repository.close() method is used when reference counting and expiration
needs to be honored. The RepositoryCache.unregisterAndCloseRepository
method should close the repository unconditionally. This is also indicated
from its javadoc.
Change-Id: I19392d1eaa17f27ae44b55eea49dcff05a52f298
The class AtomicObjectOutputStream should be available to all lfs
related classes, not only to the server side. Move the class from
org.eclipse.jgit.lfs.server.fs to org.eclipse.jgit.lfs.internal to
achieve that.
Change-Id: I028e1c9ec7c21f316340b21d558b9a6b77e2060d
Adds a JGit built-in implementation of the "git lfs smudge" filter. This
filter should do the same as the one described in [1] besides that it
only supports the local case when the lfs objects are already present in
the media directory. Remote cases where download of LFS objects from an
LFS server is needed will be done in a later commit.
[1] https://github.com/github/git-lfs/blob/master/docs/man/git-lfs-smudge.1.ronn
Change-Id: I8ff661d4edd3667ef7f86f3b4fa33e568eb4c8f4
If the configuration parameter filter.<filterDriverName>.useJGitBuiltin
is set to true then for all corresponding filters JGit will try to
execute the built-in filter instead of the filter-command which is
defined in git configuration. It will fallback to the non-built-in
filters if no built-in filters are registered or if constructing them
leads to exceptions. If set to false JGit will not try to execute
built-in filters for the specified filter driver.
Example: The configuration contains the following lines
[filter "lfs"]
clean = git-lfs clean -- %f
smudge = git-lfs smudge -- %f
useJGitBuiltin = true
Addtionally the .gitattributes file in the root of the working tree
contains:
*.bin filter=lfs
In this case when new content is added similar to "git add 1.bin" then
the following will happen:
- jgit will check whether a built-in command factory was registered
for the command "jgit://builtin/lfs/clean". If that is true the
factory is used to create a built-in filter command and that
command is used to filter the content
- Otherwise jgit will call the external program "git lfs clean ..."
to do the filtering
Change-Id: Idadb1db06b1e89e7031d7ed6319904973c367d38
JGit supports smudge filters defined in repository configuration. The
filters are implemented as external programs filtering content by
accepting the original content (as seen in git's object database) on
stdin and which emit the filtered content on stdout. This content is
then written to the file in the working tree. To run such a filter JGit
has to start an external process and pump data into/from this process.
This commit adds support for built-in smudge filters which are
implemented in Java and which are executed by jgit's main thread. When a
filter is defined in the configuration as
"jgit://builtin/<filterDriverName>/smudge" then JGit will lookup in a
static map whether a builtin filter is registered under this name. If
found such a filter is called to do the filtering.
The functionality in this commit requires that a program using JGit
explicitly calls the JGit API to register built-in implementations for
specific smudge filters. In follow-up commits configuration parameters
will be added which trigger such registrations.
Change-Id: Ia743aa0dbed795e71e5792f35ae55660e0eb3c24
JGit supports clean filters defined in repository configuration. The
filters are implemented as external programs filtering content by
accepting the original content (as seen in the working tree) on stdin
and which emit the filtered content on stdout. To run such a filter JGit
has to start an external process and pump data into/from this process.
This commit adds support for clean filters which are implemented
in Java and which are executed by jgit's main thread. When a filter is
defined in the configuration as
"jgit://builtin/<filterDriverName>/clean" then JGit will lookup in a
static map whether a filter is registered under this name. If found
such a filter is called to do the filtering.
The functionality in this commit requires that a program using JGit
explicitly calls the JGit API to register built-in implementations for
specific clean filters. In follow-up commits configuration parameters
will be added which trigger such registrations. Other commits will add
implementations for lfs filters.
Change-Id: I0344d3c54801c9a46e5a606c5df17e5f2e17b2be
This is like PackStatistics, but for PackParser.
Change-Id: I854215c0956fd0b36843d631780be303e021b8be
Signed-off-by: Masaya Suzuki <masayasuzuki@google.com>
BranchConfig treated this config property as a boolean, but git also
allows the values "preserve" and "interactive". Config property
pull.rebase also allows the same values.
Replace private enum PullCommand.PullRebaseMode by new public enum
BranchConfig.BranchRebaseMode and adapt all uses. Add a new setter to
PullCommand.
Note: PullCommand will treat "interactive" like "true", i.e., as a
non-interactive rebase. Not sure how "interactive" should be handled.
At least it won't balk on it.
Bug: 499482
Change-Id: I7309360f5662b2c2efa1bd8ea6f112c63cf064af
Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Change-Id: I6691b454404dd4db3c690ecfc7515de765bc2ef7
Signed-off-by: Martin Goellnitz <m.goellnitz@outlook.com>
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
- enhance FS.readPipe to throw an exception if the external command
fails to enable the caller to handle the command failure
- reduce log level to warning if system git config does not exist
- improve log message
Bug: 476639
Change-Id: I94ae3caec22150dde81f1ea8e1e665df55290d42
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
This allows the same try/catch to handle parsing the command list,
push certificate and push options. Any errors will be caught and
handled by the same catch block, as the client is in the same state.
Change-Id: I13a66f9100e2dc8ca8f72cd701a5bd44d093ec84
Checking if the instance allows push options before returning the
collection or null is a bit overkill. Just return the collection
or return null.
Change-Id: Icdc3755194373966e5819284aeb9bfe8dd34de82
Some embeddings of JGit require creating a ReceivePack instance in
another process from the one that handled the network socket with the
client. Similar to the PushCertificate add a setter to allow the
option list to be supplied.
Change-Id: I303a30e54942ad067c79251eff8b53329c406628
Refactor all of the push option support code to allocate the list
immediately before parsing the options section off the stream.
Move option support down to ReceivePack instead of BaseReceivePack.
Push options are specific to the ReceivePack protocol and are not
likely to appear in the 4 year old subscription proposal. These
changes are OK before JGit 4.5 ships as no consumer should be relying
on these new APIs.
Change-Id: Ib07d18c877628aba07da07cd91875f918d509c49
Initialize pushOptions when we decide to use them, instead of when we
advertise them.
In the case of HTTP the advertisement is in a different network
request, hence in a different instance of the BaseReceivePack.
Change-Id: I094c60942e04de82cb6d8433c9cd43a46ffae332
Signed-off-by: Stefan Beller <sbeller@google.com>
Do not open an OBJ_TREE if the caller is expecting an OBJ_BLOB or
OBJ_COMMIT; instead throw IncorrectObjectTypeException. This better
matches behavior of WindowCursor, the ObjectReader implementation of
the local file based object store.
Change-Id: I3fb0e77f54895b123679a405e1b6ba5b95752ff0
DfsRefDatabase#compareAndPut had a vague semantics for reference
matching. Because of this, an operation to make a symbolic
reference had been broken for some DFS implementations even if they
followed the contract of compareAndPut. The clarified semantics
requires the implementations to satisfy the followings:
* Matching references should be both symbolic references or both
object ID references.
* If both are symbolic references, both should have the same target
name.
* If both are object ID references, both should have the same object
ID.
This semantics is defined based on
https://git.eclipse.org/r/#/c/77416/. Before this commit,
DfsRefDatabase couldn't see the target of symbolic references.
InMemoryRepository is changed to comply with the new semantics. This
semantics change can affect the existing DFS implementations that only
checks object IDs. This commit adds two tests that the previous
InMemoryRepository couldn't pass.
Change-Id: I6c6b5d3cc8241a81f4a37782381c88e8a59fdf15
Signed-off-by: Masaya Suzuki <masayasuzuki@google.com>
When doing a detaching operation, JGit fakes a SymbolicRef as an
ObjectIdRef. This is because RefUpdate#updateImpl dereferences the
SymbolicRef when updating it. For example, assume that HEAD is
pointing to refs/heads/master. If I try to make a detached HEAD
pointing to a commit c0ffee, RefUpdate dereferences HEAD as
refs/heads/master first and changes refs/heads/master to c0ffee. The
detach argument of RefDatabase#newUpdate avoids this dereference by
faking HEAD as ObjectIdRef.
This faking is problematic for the linking operation of
DfsRefDatabase. It does a compare-and-swap operation on every
reference change because of its distributed systems nature. If a
SymbolicRef is faked as an ObjectRef, it thinks that there is a
racing change in the reference and rejects the update. Because of
this, DFS based repositories cannot change the link target of symbolic
refs. This has not been a problem for file-based repositories because
they have a file-lock based semantics instead of the CAS based one.
The reference implementation, InMemoryRepository, is not affected
because it only compares ObjectIds.
When [1] introduced this faking code, there was no way for RefUpdate
to distinguish the detaching operation. When [2] fixed the detaching
operation, it introduced a detachingSymbolicRef flag. This commit uses
this flag to control whether it needs to dereference the symbolic refs
by calling Ref#getLeaf. The same flag is used in the reflog update
operation.
This commit does not affect any operation that succeeds currently. In
some DFS repository implementations, this fixes a ref linking
operation, which is currently failing.
[1]: 01b5392cdb
[2]: 3a86868c08
Change-Id: I118f85f0414dbfad02250944e28d74dddd59469b
Signed-off-by: Masaya Suzuki <masayasuzuki@google.com>
Imitate the packet tracing feature from C Git v1.7.5-rc0~58^2~1 (add
packet tracing debug code, 2011-02-24). Unlike C Git, use the log4j
log level setting instead of the GIT_TRACE_PACKET environment variable
to enable tracing.
Tested as follows:
1. Enable tracing by adding the lines
log4j.logger.org.eclipse.jgit.transport=DEBUG, stderr
log4j.additivity.org.eclipse.jgit.transport=false
to org.eclipse.jgit.pgm/resources/log4j.properties.
2. mvn package
3. org.eclipse.jgit.pgm/target/jgit \
ls-remote git://git.kernel.org/pub/scm/git/git 2>&1 |less
Then the output provides a trace of packets sent and received over
the wire:
2016-08-24 16:36:42 DEBUG PacketLineOut:145 - git> git-upload-pack /pub/scm/git/git^@host=git.kernel.org^@
2016-08-24 16:36:42 DEBUG PacketLineIn:165 - git< 2632c897f74b1cc9b5533f467da459b9ec725538 HEAD^@multi_ack thin-pack side-band side-band-64k ofs-delta shallow no-progress include-tag multi_ack_detailed symref=HEAD:refs/heads/master agent=git/2.8.4
2016-08-24 16:36:42 DEBUG PacketLineIn:165 - git< e0c1ceafc5bece92d35773a75fff59497e1d9bd5 refs/heads/maint
Change-Id: I5028c064f3ac090510386057cb4e6d30d4eae232
Signed-off-by: Dan Wang <dwwang@google.com>
This fixes the tests failed in JDK8.
FS uses java.nio API to get file attributes. The timestamps obtained
from that API are more precise than the ones from
java.io.File#lastModified() since Java8.
This difference accidentally makes JGit detect newly added files as
smudged. Use the precised timestamp to avoid this false positive.
Bug: 500058
Change-Id: I9e587583c85cb6efa7562ad6c5f26577869a2e7c
Signed-off-by: Masaya Suzuki <masayasuzuki@google.com>
Signed-off-by: Andrey Loskutov <loskutov@gmx.de>
The metadata comparison of submodules is not reliable because of the
last modified timestamp and directory length.
Bug: 498759
Change-Id: If5db69ef3868e475ac477d3e8a7750b268799b0c
The exception can be thrown in a various reason, and sometimes 403
Forbidden is not appropriate. Make the HTTP status code customizable.
Change-Id: If2ef6f454f7479158a4e28a12909837db483521c
Signed-off-by: Masaya Suzuki <masayasuzuki@google.com>
AddCommandTest is flaky because IOException is thrown sometimes.
Caused by: java.io.IOException: Stream closed
at java.lang.ProcessBuilder$NullOutputStream.write(ProcessBuilder.java:433)
at java.io.OutputStream.write(OutputStream.java:116)
at java.io.BufferedOutputStream.flushBuffer(BufferedOutputStream.java:82)
at java.io.BufferedOutputStream.flush(BufferedOutputStream.java:140)
at java.io.FilterOutputStream.close(FilterOutputStream.java:158)
at org.eclipse.jgit.util.FS.runProcess(FS.java:993)
at org.eclipse.jgit.util.FS.execute(FS.java:1102)
at org.eclipse.jgit.treewalk.WorkingTreeIterator.filterClean(WorkingTreeIterator.java:470)
... 22 more
OpenJDK replaces the underlying OutputStream with NullOutputStream when
the process exits. This throws IOException for all write operation. When
it exits before JGit writes the input to the pipe buffer, the input
stays in BufferedOutputStream. The close method tries to write it again,
and IOException is thrown.
Since we ignore IOException in StreamGobbler, we also ignore it when
we close the stream.
Fixes Bug 499633.
Change-Id: I30c7ac78e05b00bd0152f697848f4d17d53efd17
Signed-off-by: Masaya Suzuki <draftcode@gmail.com>
If a reference was updated more recently than a pack was written
(typical) the PackList was perpetually dirty until the next GC
was completed for the repository.
Detect this condition by observing no changes to the PackList
membership and resetting the dirty bit.
Change-Id: Ie2133aca1f8083307c73b6a26358175864f100ef
Marc Strapetz
Thomas Meyer
David Turner
Philipp Marx
David Pursehouse
Matthias Sohn
Hugo Arès
Thomas Wolf
Zhen Chen
Rüdiger Herrmann
Christian Halstrick
Saša Živkov
Masaya Suzuki
Andrey Loskutov
Martin Goellnitz
Shawn Pearce
Jonathan Nieder
Stefan Beller
Masaya Suzuki
Dan Wang