Merge branch 'stable-3.5' into stable-3.6

* stable-3.5:
  JGit v3.5.3.201412180710-r
  JGit v3.4.2.201412180340-r
  ObjectChecker: Disallow names potentially mapping to ".git" on HFS+
  ObjectChecker: Disallow Windows shortname "GIT~1"
  ObjectChecker: Disallow ".git." and ".git<space>"
  Always ignore case when forbidding .git in ObjectChecker
  DirCache: Refuse to read files with invalid paths
  DirCache: Replace isValidPath with DirCacheCheckout.checkValidPath
  Replace "a." with "a-" in unit tests
  Apache HttpClientConnection: replace calls to deprecated LocalFile()
  Fix two nits about DirCacheEntry constructors
  Detect buffering failures while writing rebase todo file
  Deprecate TemporaryBuffer.LocalFile without parent directory
  Switch FileHeader.extractFileLines to TemporaryBuffer.Heap
  AmazonS3: Buffer pushed pack content under $GIT_DIR
  DirCache: Buffer TREE extension to $GIT_DIR

Change-Id: Iee8acbaa9d4d9047b550641db1b8845d64530785
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

org.eclipse.jgit.http.apache/src/org/eclipse/jgit/transport/http/apache/HttpClientConnection.java

@@ -309,19 +309,19 @@ public class HttpClientConnection implements HttpConnection {
 	public void setFixedLengthStreamingMode(int contentLength) {
 		if (entity != null)
 			throw new IllegalArgumentException();
-		entity = new TemporaryBufferEntity(new LocalFile());
+		entity = new TemporaryBufferEntity(new LocalFile(null));
 		entity.setContentLength(contentLength);
 	}
 
 	public OutputStream getOutputStream() throws IOException {
 		if (entity == null)
-			entity = new TemporaryBufferEntity(new LocalFile());
+			entity = new TemporaryBufferEntity(new LocalFile(null));
 		return entity.getBuffer();
 	}
 
 	public void setChunkedStreamingMode(int chunklen) {
 		if (entity == null)
-			entity = new TemporaryBufferEntity(new LocalFile());
+			entity = new TemporaryBufferEntity(new LocalFile(null));
 		entity.setChunked(true);
 	}
 

org.eclipse.jgit.test/exttst/org/eclipse/jgit/patch/EGitPatchHistoryTest.java

@@ -216,7 +216,7 @@ public class EGitPatchHistoryTest {
 						buf.destroy();
 					}
 					commitId = line.substring("commit ".length());
-					buf = new TemporaryBuffer.LocalFile();
+					buf = new TemporaryBuffer.LocalFile(null);
 				} else if (buf != null) {
 					buf.write(line.getBytes("ISO-8859-1"));
 					buf.write('\n');

org.eclipse.jgit.test/tst/org/eclipse/jgit/dircache/DirCacheBasicTest.java

@@ -47,12 +47,19 @@ import static org.junit.Assert.assertEquals;
 import static org.junit.Assert.assertFalse;
 import static org.junit.Assert.assertNotNull;
 import static org.junit.Assert.assertTrue;
+import static org.junit.Assert.fail;
 
 import java.io.File;
+import java.text.MessageFormat;
 
+import org.eclipse.jgit.errors.CorruptObjectException;
+import org.eclipse.jgit.internal.JGitText;
+import org.eclipse.jgit.junit.MockSystemReader;
 import org.eclipse.jgit.junit.RepositoryTestCase;
 import org.eclipse.jgit.lib.Constants;
 import org.eclipse.jgit.lib.FileMode;
+import org.eclipse.jgit.lib.ObjectInserter;
+import org.eclipse.jgit.util.SystemReader;
 import org.junit.Test;
 
 public class DirCacheBasicTest extends RepositoryTestCase {
@@ -190,7 +197,7 @@ public class DirCacheBasicTest extends RepositoryTestCase {
 	public void testBuildThenClear() throws Exception {
 		final DirCache dc = db.readDirCache();
 
-		final String[] paths = { "a.", "a.b", "a/b", "a0b" };
+		final String[] paths = { "a-", "a.b", "a/b", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -234,4 +241,41 @@ public class DirCacheBasicTest extends RepositoryTestCase {
 		final byte[] path = Constants.encode("a");
 		assertEquals(-1, dc.findEntry(path, path.length));
 	}
+
+	@Test
+	public void testRejectInvalidWindowsPaths() throws Exception {
+		SystemReader.setInstance(new MockSystemReader() {
+			{
+				setUnix();
+			}
+		});
+
+		String path = "src/con.txt";
+		DirCache dc = db.lockDirCache();
+		DirCacheBuilder b = dc.builder();
+		DirCacheEntry e = new DirCacheEntry(path);
+		e.setFileMode(FileMode.REGULAR_FILE);
+		e.setObjectId(new ObjectInserter.Formatter().idFor(
+				Constants.OBJ_BLOB,
+				Constants.encode(path)));
+		b.add(e);
+		b.commit();
+		db.readDirCache();
+
+		SystemReader.setInstance(new MockSystemReader() {
+			{
+				setWindows();
+			}
+		});
+
+		try {
+			db.readDirCache();
+			fail("should have rejected " + path);
+		} catch (CorruptObjectException err) {
+			assertEquals(MessageFormat.format(JGitText.get().invalidPath, path),
+					err.getMessage());
+			assertNotNull(err.getCause());
+			assertEquals("invalid name 'CON'", err.getCause().getMessage());
+		}
+	}
 }

org.eclipse.jgit.test/tst/org/eclipse/jgit/dircache/DirCacheBuilderIteratorTest.java

@@ -63,7 +63,7 @@ public class DirCacheBuilderIteratorTest extends RepositoryTestCase {
 		final DirCache dc = db.readDirCache();
 
 		final FileMode mode = FileMode.REGULAR_FILE;
-		final String[] paths = { "a.", "a/b", "a/c", "a/d", "a0b" };
+		final String[] paths = { "a-", "a/b", "a/c", "a/d", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);

org.eclipse.jgit.test/tst/org/eclipse/jgit/dircache/DirCacheBuilderTest.java

@@ -290,7 +290,7 @@ public class DirCacheBuilderTest extends RepositoryTestCase {
 	public void testAdd_InGitSortOrder() throws Exception {
 		final DirCache dc = db.readDirCache();
 
-		final String[] paths = { "a.", "a.b", "a/b", "a0b" };
+		final String[] paths = { "a-", "a.b", "a/b", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -315,7 +315,7 @@ public class DirCacheBuilderTest extends RepositoryTestCase {
 	public void testAdd_ReverseGitSortOrder() throws Exception {
 		final DirCache dc = db.readDirCache();
 
-		final String[] paths = { "a.", "a.b", "a/b", "a0b" };
+		final String[] paths = { "a-", "a.b", "a/b", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -340,7 +340,7 @@ public class DirCacheBuilderTest extends RepositoryTestCase {
 	public void testBuilderClear() throws Exception {
 		final DirCache dc = db.readDirCache();
 
-		final String[] paths = { "a.", "a.b", "a/b", "a0b" };
+		final String[] paths = { "a-", "a.b", "a/b", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);

org.eclipse.jgit.test/tst/org/eclipse/jgit/dircache/DirCacheCGitCompatabilityTest.java

@@ -213,7 +213,7 @@ public class DirCacheCGitCompatabilityTest extends LocalDiskRepositoryTestCase {
 		assertV3TreeEntry(9, "newfile.txt", false, true, dc);
 
 		final ByteArrayOutputStream bos = new ByteArrayOutputStream();
-		dc.writeTo(bos);
+		dc.writeTo(null, bos);
 		final byte[] indexBytes = bos.toByteArray();
 		final byte[] expectedBytes = IO.readFully(file);
 		assertArrayEquals(expectedBytes, indexBytes);

org.eclipse.jgit.test/tst/org/eclipse/jgit/dircache/DirCacheEntryTest.java

@@ -49,7 +49,6 @@ import static org.junit.Assert.assertSame;
 import static org.junit.Assert.assertTrue;
 import static org.junit.Assert.fail;
 
-import org.eclipse.jgit.lib.Constants;
 import org.eclipse.jgit.lib.FileMode;
 import org.eclipse.jgit.lib.ObjectId;
 import org.junit.Test;
@@ -71,7 +70,12 @@ public class DirCacheEntryTest {
 	}
 
 	private static boolean isValidPath(final String path) {
-		return DirCacheEntry.isValidPath(Constants.encode(path));
+		try {
+			DirCacheCheckout.checkValidPath(path);
+			return true;
+		} catch (InvalidPathException e) {
+			return false;
+		}
 	}
 
 	@Test

org.eclipse.jgit.test/tst/org/eclipse/jgit/dircache/DirCacheFindTest.java

@@ -56,7 +56,7 @@ public class DirCacheFindTest extends RepositoryTestCase {
 	public void testEntriesWithin() throws Exception {
 		final DirCache dc = db.readDirCache();
 
-		final String[] paths = { "a.", "a/b", "a/c", "a/d", "a0b" };
+		final String[] paths = { "a-", "a/b", "a/c", "a/d", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -96,13 +96,13 @@ public class DirCacheFindTest extends RepositoryTestCase {
 				assertSame(ents[i], aContents[i]);
 		}
 
-		assertNotNull(dc.getEntriesWithin("a."));
-		assertEquals(0, dc.getEntriesWithin("a.").length);
+		assertNotNull(dc.getEntriesWithin("a-"));
+		assertEquals(0, dc.getEntriesWithin("a-").length);
 
 		assertNotNull(dc.getEntriesWithin("a0b"));
-		assertEquals(0, dc.getEntriesWithin("a0b.").length);
+		assertEquals(0, dc.getEntriesWithin("a0b-").length);
 
 		assertNotNull(dc.getEntriesWithin("zoo"));
-		assertEquals(0, dc.getEntriesWithin("zoo.").length);
+		assertEquals(0, dc.getEntriesWithin("zoo-").length);
 	}
 }

org.eclipse.jgit.test/tst/org/eclipse/jgit/dircache/DirCacheIteratorTest.java

@@ -85,7 +85,7 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 	public void testNoSubtree_NoTreeWalk() throws Exception {
 		final DirCache dc = DirCache.newInCore();
 
-		final String[] paths = { "a.", "a0b" };
+		final String[] paths = { "a-", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -111,7 +111,7 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 	public void testNoSubtree_WithTreeWalk() throws Exception {
 		final DirCache dc = DirCache.newInCore();
 
-		final String[] paths = { "a.", "a0b" };
+		final String[] paths = { "a-", "a0b" };
 		final FileMode[] modes = { FileMode.EXECUTABLE_FILE, FileMode.GITLINK };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
@@ -144,7 +144,7 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 	public void testSingleSubtree_NoRecursion() throws Exception {
 		final DirCache dc = DirCache.newInCore();
 
-		final String[] paths = { "a.", "a/b", "a/c", "a/d", "a0b" };
+		final String[] paths = { "a-", "a/b", "a/c", "a/d", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -156,7 +156,7 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 			b.add(ents[i]);
 		b.finish();
 
-		final String[] expPaths = { "a.", "a", "a0b" };
+		final String[] expPaths = { "a-", "a", "a0b" };
 		final FileMode[] expModes = { FileMode.REGULAR_FILE, FileMode.TREE,
 				FileMode.REGULAR_FILE };
 		final int expPos[] = { 0, -1, 4 };
@@ -189,7 +189,7 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 		final DirCache dc = DirCache.newInCore();
 
 		final FileMode mode = FileMode.REGULAR_FILE;
-		final String[] paths = { "a.", "a/b", "a/c", "a/d", "a0b" };
+		final String[] paths = { "a-", "a/b", "a/c", "a/d", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -224,7 +224,7 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 		final DirCache dc = DirCache.newInCore();
 
 		final FileMode mode = FileMode.REGULAR_FILE;
-		final String[] paths = { "a.", "a/b", "a/c/e", "a/c/f", "a/d", "a0b" };
+		final String[] paths = { "a-", "a/b", "a/c/e", "a/c/f", "a/d", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -258,7 +258,7 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 		final DirCache dc = DirCache.newInCore();
 
 		final FileMode mode = FileMode.REGULAR_FILE;
-		final String[] paths = { "a.", "a/b", "a/c/e", "a/c/f", "a/d", "a0b" };
+		final String[] paths = { "a-", "a/b", "a/c/e", "a/c/f", "a/d", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -272,7 +272,7 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 
 		DirCacheIterator dci = new DirCacheIterator(dc);
 		assertFalse(dci.eof());
-		assertEquals("a.", dci.getEntryPathString());
+		assertEquals("a-", dci.getEntryPathString());
 		dci.next(1);
 		assertFalse(dci.eof());
 		assertEquals("a", dci.getEntryPathString());
@@ -285,7 +285,7 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 		// same entries the second time
 		dci.reset();
 		assertFalse(dci.eof());
-		assertEquals("a.", dci.getEntryPathString());
+		assertEquals("a-", dci.getEntryPathString());
 		dci.next(1);
 		assertFalse(dci.eof());
 		assertEquals("a", dci.getEntryPathString());
@@ -304,12 +304,12 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 		assertEquals("a", dci.getEntryPathString());
 		dci.back(1);
 		assertFalse(dci.eof());
-		assertEquals("a.", dci.getEntryPathString());
+		assertEquals("a-", dci.getEntryPathString());
 		assertTrue(dci.first());
 
 		// forward
 		assertFalse(dci.eof());
-		assertEquals("a.", dci.getEntryPathString());
+		assertEquals("a-", dci.getEntryPathString());
 		dci.next(1);
 		assertFalse(dci.eof());
 		assertEquals("a", dci.getEntryPathString());
@@ -385,7 +385,7 @@ public class DirCacheIteratorTest extends RepositoryTestCase {
 		final DirCache dc = DirCache.newInCore();
 
 		final FileMode mode = FileMode.REGULAR_FILE;
-		final String[] paths = { "a.", "a/b", "a/c/e", "a/c/f", "a/d", "a0b" };
+		final String[] paths = { "a-", "a/b", "a/c/e", "a/c/f", "a/d", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);

org.eclipse.jgit.test/tst/org/eclipse/jgit/dircache/DirCachePathEditTest.java

@@ -113,21 +113,23 @@ public class DirCachePathEditTest {
 		DirCache dc = DirCache.newInCore();
 		DirCacheEditor editor = dc.editor();
 		editor.add(new AddEdit("a/b"));
-		editor.add(new AddEdit("a."));
+		editor.add(new AddEdit("a-"));
 		editor.add(new AddEdit("ab"));
 		editor.finish();
 		assertEquals(3, dc.getEntryCount());
+
 		// Validate sort order
-		assertEquals("a.", dc.getEntry(0).getPathString());
+		assertEquals("a-", dc.getEntry(0).getPathString());
 		assertEquals("a/b", dc.getEntry(1).getPathString());
 		assertEquals("ab", dc.getEntry(2).getPathString());
 
 		editor = dc.editor();
+
 		// Sort order should not confuse DeleteTree
 		editor.add(new DirCacheEditor.DeleteTree("a"));
 		editor.finish();
 		assertEquals(2, dc.getEntryCount());
-		assertEquals("a.", dc.getEntry(0).getPathString());
+		assertEquals("a-", dc.getEntry(0).getPathString());
 		assertEquals("ab", dc.getEntry(1).getPathString());
 	}
 

org.eclipse.jgit.test/tst/org/eclipse/jgit/dircache/DirCacheTreeTest.java

@@ -92,7 +92,7 @@ public class DirCacheTreeTest extends RepositoryTestCase {
 	public void testSingleSubtree() throws Exception {
 		final DirCache dc = db.readDirCache();
 
-		final String[] paths = { "a.", "a/b", "a/c", "a/d", "a0b" };
+		final String[] paths = { "a-", "a/b", "a/c", "a/d", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -130,7 +130,7 @@ public class DirCacheTreeTest extends RepositoryTestCase {
 	public void testTwoLevelSubtree() throws Exception {
 		final DirCache dc = db.readDirCache();
 
-		final String[] paths = { "a.", "a/b", "a/c/e", "a/c/f", "a/d", "a0b" };
+		final String[] paths = { "a-", "a/b", "a/c/e", "a/c/f", "a/d", "a0b" };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);
@@ -190,7 +190,7 @@ public class DirCacheTreeTest extends RepositoryTestCase {
 
 		final String A = String.format("a%2000s", "a");
 		final String B = String.format("b%2000s", "b");
-		final String[] paths = { A + ".", A + "." + B, A + "/" + B, A + "0" + B };
+		final String[] paths = { A + "-", A + "-" + B, A + "/" + B, A + "0" + B };
 		final DirCacheEntry[] ents = new DirCacheEntry[paths.length];
 		for (int i = 0; i < paths.length; i++) {
 			ents[i] = new DirCacheEntry(paths[i]);

org.eclipse.jgit.test/tst/org/eclipse/jgit/lib/DirCacheCheckoutMaliciousPathTest.java

@@ -186,10 +186,7 @@ public class DirCacheCheckoutMaliciousPathTest extends RepositoryTestCase {
 
 	@Test
 	public void testMaliciousGitPathEndSpaceUnixOk() throws Exception {
-		if (File.separatorChar == '\\')
-			return; // cannot emulate Unix on Windows for this test
-		((MockSystemReader) SystemReader.getInstance()).setUnix();
-		testMaliciousPathGoodFirstCheckout(".git ", "konfig");
+		testMaliciousPathBadFirstCheckout(".git ", "konfig");
 	}
 
 	@Test
@@ -212,10 +209,7 @@ public class DirCacheCheckoutMaliciousPathTest extends RepositoryTestCase {
 
 	@Test
 	public void testMaliciousGitPathEndDotUnixOk() throws Exception {
-		if (File.separatorChar == '\\')
-			return; // cannot emulate Unix on Windows for this test
-		((MockSystemReader) SystemReader.getInstance()).setUnix();
-		testMaliciousPathGoodFirstCheckout(".git.", "konfig");
+		testMaliciousPathBadFirstCheckout(".git.", "konfig");
 	}
 
 	@Test

org.eclipse.jgit.test/tst/org/eclipse/jgit/lib/ObjectCheckerTest.java

@@ -1295,12 +1295,11 @@ public class ObjectCheckerTest {
 	}
 
 	@Test
-	public void testInvalidTreeNameIsMixedCaseGitWindows() {
+	public void testInvalidTreeNameIsMixedCaseGit() {
 		StringBuilder b = new StringBuilder();
 		entry(b, "100644 .GiT");
 		byte[] data = Constants.encodeASCII(b.toString());
 		try {
-			checker.setSafeForWindows(true);
 			checker.checkTree(data);
 			fail("incorrectly accepted an invalid tree");
 		} catch (CorruptObjectException e) {
@@ -1309,19 +1308,255 @@ public class ObjectCheckerTest {
 	}
 
 	@Test
-	public void testInvalidTreeNameIsMixedCaseGitMacOS() {
+	public void testInvalidTreeNameIsMacHFSGit() {
 		StringBuilder b = new StringBuilder();
-		entry(b, "100644 .GiT");
-		byte[] data = Constants.encodeASCII(b.toString());
+		entry(b, "100644 .gi\u200Ct");
+		byte[] data = Constants.encode(b.toString());
 		try {
 			checker.setSafeForMacOS(true);
 			checker.checkTree(data);
 			fail("incorrectly accepted an invalid tree");
 		} catch (CorruptObjectException e) {
-			assertEquals("invalid name '.GiT'", e.getMessage());
+			assertEquals(
+					"invalid name '.gi\u200Ct' contains ignorable Unicode characters",
+					e.getMessage());
+		}
+	}
+
+	@Test
+	public void testInvalidTreeNameIsMacHFSGit2() {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 \u206B.git");
+		byte[] data = Constants.encode(b.toString());
+		try {
+			checker.setSafeForMacOS(true);
+			checker.checkTree(data);
+			fail("incorrectly accepted an invalid tree");
+		} catch (CorruptObjectException e) {
+			assertEquals(
+					"invalid name '\u206B.git' contains ignorable Unicode characters",
+					e.getMessage());
+		}
+	}
+
+	@Test
+	public void testInvalidTreeNameIsMacHFSGit3() {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .git\uFEFF");
+		byte[] data = Constants.encode(b.toString());
+		try {
+			checker.setSafeForMacOS(true);
+			checker.checkTree(data);
+			fail("incorrectly accepted an invalid tree");
+		} catch (CorruptObjectException e) {
+			assertEquals(
+					"invalid name '.git\uFEFF' contains ignorable Unicode characters",
+					e.getMessage());
+		}
+	}
+
+	private static byte[] concat(byte[] b1, byte[] b2) {
+		byte[] data = new byte[b1.length + b2.length];
+		System.arraycopy(b1, 0, data, 0, b1.length);
+		System.arraycopy(b2, 0, data, b1.length, b2.length);
+		return data;
+	}
+
+	@Test
+	public void testInvalidTreeNameIsMacHFSGitCorruptUTF8AtEnd() {
+		byte[] data = concat(Constants.encode("100644 .git"),
+				new byte[] { (byte) 0xef });
+		StringBuilder b = new StringBuilder();
+		entry(b, "");
+		data = concat(data, Constants.encode(b.toString()));
+		try {
+			checker.setSafeForMacOS(true);
+			checker.checkTree(data);
+			fail("incorrectly accepted an invalid tree");
+		} catch (CorruptObjectException e) {
+			assertEquals(
+					"invalid name contains byte sequence '0xef' which is not a valid UTF-8 character",
+					e.getMessage());
+		}
+	}
+
+	@Test
+	public void testInvalidTreeNameIsMacHFSGitCorruptUTF8AtEnd2() {
+		byte[] data = concat(Constants.encode("100644 .git"), new byte[] {
+				(byte) 0xe2, (byte) 0xab });
+		StringBuilder b = new StringBuilder();
+		entry(b, "");
+		data = concat(data, Constants.encode(b.toString()));
+		try {
+			checker.setSafeForMacOS(true);
+			checker.checkTree(data);
+			fail("incorrectly accepted an invalid tree");
+		} catch (CorruptObjectException e) {
+			assertEquals(
+					"invalid name contains byte sequence '0xe2ab' which is not a valid UTF-8 character",
+					e.getMessage());
+		}
+	}
+
+	@Test
+	public void testInvalidTreeNameIsNotMacHFSGit()
+			throws CorruptObjectException {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .git\u200Cx");
+		byte[] data = Constants.encode(b.toString());
+		checker.setSafeForMacOS(true);
+		checker.checkTree(data);
+	}
+
+	@Test
+	public void testInvalidTreeNameIsNotMacHFSGit2()
+			throws CorruptObjectException {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .kit\u200C");
+		byte[] data = Constants.encode(b.toString());
+		checker.setSafeForMacOS(true);
+		checker.checkTree(data);
+	}
+
+	@Test
+	public void testInvalidTreeNameIsNotMacHFSGitOtherPlatform()
+			throws CorruptObjectException {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .git\u200C");
+		byte[] data = Constants.encode(b.toString());
+		checker.checkTree(data);
+	}
+
+	@Test
+	public void testInvalidTreeNameIsDotGitDot() {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .git.");
+		byte[] data = Constants.encodeASCII(b.toString());
+		try {
+			checker.checkTree(data);
+			fail("incorrectly accepted an invalid tree");
+		} catch (CorruptObjectException e) {
+			assertEquals("invalid name '.git.'", e.getMessage());
+		}
+	}
+
+	@Test
+	public void testValidTreeNameIsDotGitDotDot()
+			throws CorruptObjectException {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .git..");
+		checker.checkTree(Constants.encodeASCII(b.toString()));
+	}
+
+	@Test
+	public void testInvalidTreeNameIsDotGitSpace() {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .git ");
+		byte[] data = Constants.encodeASCII(b.toString());
+		try {
+			checker.checkTree(data);
+			fail("incorrectly accepted an invalid tree");
+		} catch (CorruptObjectException e) {
+			assertEquals("invalid name '.git '", e.getMessage());
 		}
 	}
 
+	@Test
+	public void testInvalidTreeNameIsDotGitSomething()
+			throws CorruptObjectException {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .gitfoobar");
+		byte[] data = Constants.encodeASCII(b.toString());
+		checker.checkTree(data);
+	}
+
+	@Test
+	public void testInvalidTreeNameIsDotGitSomethingSpaceSomething()
+			throws CorruptObjectException {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .gitfoo bar");
+		byte[] data = Constants.encodeASCII(b.toString());
+		checker.checkTree(data);
+	}
+
+	@Test
+	public void testInvalidTreeNameIsDotGitSomethingDot()
+			throws CorruptObjectException {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .gitfoobar.");
+		byte[] data = Constants.encodeASCII(b.toString());
+		checker.checkTree(data);
+	}
+
+	@Test
+	public void testInvalidTreeNameIsDotGitSomethingDotDot()
+			throws CorruptObjectException {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .gitfoobar..");
+		byte[] data = Constants.encodeASCII(b.toString());
+		checker.checkTree(data);
+	}
+
+	@Test
+	public void testInvalidTreeNameIsDotGitDotSpace() {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .git. ");
+		byte[] data = Constants.encodeASCII(b.toString());
+		try {
+			checker.checkTree(data);
+			fail("incorrectly accepted an invalid tree");
+		} catch (CorruptObjectException e) {
+			assertEquals("invalid name '.git. '", e.getMessage());
+		}
+	}
+
+	@Test
+	public void testInvalidTreeNameIsDotGitSpaceDot() {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 .git . ");
+		byte[] data = Constants.encodeASCII(b.toString());
+		try {
+			checker.checkTree(data);
+			fail("incorrectly accepted an invalid tree");
+		} catch (CorruptObjectException e) {
+			assertEquals("invalid name '.git . '", e.getMessage());
+		}
+	}
+
+	@Test
+	public void testInvalidTreeNameIsGITTilde1() {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 GIT~1");
+		byte[] data = Constants.encodeASCII(b.toString());
+		try {
+			checker.checkTree(data);
+			fail("incorrectly accepted an invalid tree");
+		} catch (CorruptObjectException e) {
+			assertEquals("invalid name 'GIT~1'", e.getMessage());
+		}
+	}
+
+	@Test
+	public void testInvalidTreeNameIsGiTTilde1() {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 GiT~1");
+		byte[] data = Constants.encodeASCII(b.toString());
+		try {
+			checker.checkTree(data);
+			fail("incorrectly accepted an invalid tree");
+		} catch (CorruptObjectException e) {
+			assertEquals("invalid name 'GiT~1'", e.getMessage());
+		}
+	}
+
+	@Test
+	public void testValidTreeNameIsGitTilde11() throws CorruptObjectException {
+		StringBuilder b = new StringBuilder();
+		entry(b, "100644 GIT~11");
+		byte[] data = Constants.encodeASCII(b.toString());
+		checker.checkTree(data);
+	}
+
 	@Test
 	public void testInvalidTreeTruncatedInName() {
 		final StringBuilder b = new StringBuilder();

org.eclipse.jgit.test/tst/org/eclipse/jgit/treewalk/filter/PathFilterGroupTest.java

@@ -169,7 +169,7 @@ public class PathFilterGroupTest {
 		}
 
 		// less obvious due to git sorting order
-		filter.include(fakeWalk("d."));
+		filter.include(fakeWalk("d-"));
 
 		// less obvious due to git sorting order
 		try {

org.eclipse.jgit.test/tst/org/eclipse/jgit/util/TemporaryBufferTest.java

@@ -59,7 +59,7 @@ import org.junit.Test;
 public class TemporaryBufferTest {
 	@Test
 	public void testEmpty() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		try {
 			b.close();
 			assertEquals(0, b.length());
@@ -73,7 +73,7 @@ public class TemporaryBufferTest {
 
 	@Test
 	public void testOneByte() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		final byte test = (byte) new TestRng(getName()).nextInt();
 		try {
 			b.write(test);
@@ -100,7 +100,7 @@ public class TemporaryBufferTest {
 
 	@Test
 	public void testOneBlock_BulkWrite() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		final byte[] test = new TestRng(getName())
 				.nextBytes(TemporaryBuffer.Block.SZ);
 		try {
@@ -131,7 +131,7 @@ public class TemporaryBufferTest {
 
 	@Test
 	public void testOneBlockAndHalf_BulkWrite() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		final byte[] test = new TestRng(getName())
 				.nextBytes(TemporaryBuffer.Block.SZ * 3 / 2);
 		try {
@@ -162,7 +162,7 @@ public class TemporaryBufferTest {
 
 	@Test
 	public void testOneBlockAndHalf_SingleWrite() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		final byte[] test = new TestRng(getName())
 				.nextBytes(TemporaryBuffer.Block.SZ * 3 / 2);
 		try {
@@ -191,7 +191,7 @@ public class TemporaryBufferTest {
 
 	@Test
 	public void testOneBlockAndHalf_Copy() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		final byte[] test = new TestRng(getName())
 				.nextBytes(TemporaryBuffer.Block.SZ * 3 / 2);
 		try {
@@ -221,7 +221,7 @@ public class TemporaryBufferTest {
 
 	@Test
 	public void testLarge_SingleWrite() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		final byte[] test = new TestRng(getName())
 				.nextBytes(TemporaryBuffer.DEFAULT_IN_CORE_LIMIT * 3);
 		try {
@@ -263,7 +263,7 @@ public class TemporaryBufferTest {
 
 	@Test
 	public void testInCoreLimit_SwitchOnAppendByte() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		final byte[] test = new TestRng(getName())
 				.nextBytes(TemporaryBuffer.DEFAULT_IN_CORE_LIMIT + 1);
 		try {
@@ -292,7 +292,7 @@ public class TemporaryBufferTest {
 
 	@Test
 	public void testInCoreLimit_SwitchBeforeAppendByte() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		final byte[] test = new TestRng(getName())
 				.nextBytes(TemporaryBuffer.DEFAULT_IN_CORE_LIMIT * 3);
 		try {
@@ -321,7 +321,7 @@ public class TemporaryBufferTest {
 
 	@Test
 	public void testInCoreLimit_SwitchOnCopy() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		final byte[] test = new TestRng(getName())
 				.nextBytes(TemporaryBuffer.DEFAULT_IN_CORE_LIMIT * 2);
 		try {
@@ -354,7 +354,7 @@ public class TemporaryBufferTest {
 	@Test
 	public void testDestroyWhileOpen() throws IOException {
 		@SuppressWarnings("resource" /* java 7 */)
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		try {
 			b.write(new TestRng(getName())
 					.nextBytes(TemporaryBuffer.DEFAULT_IN_CORE_LIMIT * 2));
@@ -365,7 +365,7 @@ public class TemporaryBufferTest {
 
 	@Test
 	public void testRandomWrites() throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
+		final TemporaryBuffer b = new TemporaryBuffer.LocalFile(null);
 		final TestRng rng = new TestRng(getName());
 		final int max = TemporaryBuffer.DEFAULT_IN_CORE_LIMIT * 2;
 		final byte[] expect = new byte[max];

org.eclipse.jgit/src/org/eclipse/jgit/dircache/DirCache.java

@@ -607,7 +607,8 @@ public class DirCache {
 		final LockFile tmp = myLock;
 		requireLocked(tmp);
 		try {
-			writeTo(new SafeBufferedOutputStream(tmp.getOutputStream()));
+			writeTo(liveFile.getParentFile(),
+					new SafeBufferedOutputStream(tmp.getOutputStream()));
 		} catch (IOException err) {
 			tmp.unlock();
 			throw err;
@@ -620,7 +621,7 @@ public class DirCache {
 		}
 	}
 
-	void writeTo(final OutputStream os) throws IOException {
+	void writeTo(File dir, final OutputStream os) throws IOException {
 		final MessageDigest foot = Constants.newMessageDigest();
 		final DigestOutputStream dos = new DigestOutputStream(os, foot);
 
@@ -670,14 +671,18 @@ public class DirCache {
 		}
 
 		if (writeTree) {
-			final TemporaryBuffer bb = new TemporaryBuffer.LocalFile();
-			tree.write(tmp, bb);
-			bb.close();
-
-			NB.encodeInt32(tmp, 0, EXT_TREE);
-			NB.encodeInt32(tmp, 4, (int) bb.length());
-			dos.write(tmp, 0, 8);
-			bb.writeTo(dos, null);
+			TemporaryBuffer bb = new TemporaryBuffer.LocalFile(dir, 5 << 20);
+			try {
+				tree.write(tmp, bb);
+				bb.close();
+
+				NB.encodeInt32(tmp, 0, EXT_TREE);
+				NB.encodeInt32(tmp, 4, (int) bb.length());
+				dos.write(tmp, 0, 8);
+				bb.writeTo(dos, null);
+			} finally {
+				bb.destroy();
+			}
 		}
 		writeIndexChecksum = foot.digest();
 		os.write(writeIndexChecksum);

org.eclipse.jgit/src/org/eclipse/jgit/dircache/DirCacheCheckout.java

@@ -1291,7 +1291,9 @@ public class DirCacheCheckout {
 		try {
 			SystemReader.getInstance().checkPath(path);
 		} catch (CorruptObjectException e) {
-			throw new InvalidPathException(path);
+			InvalidPathException p = new InvalidPathException(path);
+			p.initCause(e);
+			throw p;
 		}
 	}
 

org.eclipse.jgit/src/org/eclipse/jgit/dircache/DirCacheEntry.java

@@ -56,6 +56,7 @@ import java.security.MessageDigest;
 import java.text.MessageFormat;
 import java.util.Arrays;
 
+import org.eclipse.jgit.errors.CorruptObjectException;
 import org.eclipse.jgit.internal.JGitText;
 import org.eclipse.jgit.lib.AnyObjectId;
 import org.eclipse.jgit.lib.Constants;
@@ -64,7 +65,6 @@ import org.eclipse.jgit.lib.ObjectId;
 import org.eclipse.jgit.util.IO;
 import org.eclipse.jgit.util.MutableInteger;
 import org.eclipse.jgit.util.NB;
-import org.eclipse.jgit.util.SystemReader;
 
 /**
  * A single file (or stage of a file) in a {@link DirCache}.
@@ -190,6 +190,16 @@ public class DirCacheEntry {
 			md.update((byte) 0);
 		}
 
+		try {
+			DirCacheCheckout.checkValidPath(toString(path));
+		} catch (InvalidPathException e) {
+			CorruptObjectException p =
+				new CorruptObjectException(e.getMessage());
+			if (e.getCause() != null)
+				p.initCause(e.getCause());
+			throw p;
+		}
+
 		// Index records are padded out to the next 8 byte alignment
 		// for historical reasons related to how C Git read the files.
 		//
@@ -203,7 +213,6 @@ public class DirCacheEntry {
 
 		if (mightBeRacilyClean(smudge_s, smudge_ns))
 			smudgeRacilyClean();
-
 	}
 
 	/**
@@ -217,7 +226,7 @@ public class DirCacheEntry {
 	 *             or DirCache file.
 	 */
 	public DirCacheEntry(final String newPath) {
-		this(Constants.encode(newPath));
+		this(Constants.encode(newPath), STAGE_0);
 	}
 
 	/**
@@ -266,11 +275,11 @@ public class DirCacheEntry {
 	 */
 	@SuppressWarnings("boxing")
 	public DirCacheEntry(final byte[] newPath, final int stage) {
-		if (!isValidPath(newPath))
-			throw new InvalidPathException(toString(newPath));
+		DirCacheCheckout.checkValidPath(toString(newPath));
 		if (stage < 0 || 3 < stage)
-			throw new IllegalArgumentException(MessageFormat.format(JGitText.get().invalidStageForPath
-					, stage, toString(newPath)));
+			throw new IllegalArgumentException(MessageFormat.format(
+					JGitText.get().invalidStageForPath,
+					stage, toString(newPath)));
 
 		info = new byte[INFO_LEN];
 		infoOffset = 0;
@@ -725,36 +734,6 @@ public class DirCacheEntry {
 		return Constants.CHARSET.decode(ByteBuffer.wrap(path)).toString();
 	}
 
-	static boolean isValidPath(final byte[] path) {
-		if (path.length == 0)
-			return false; // empty path is not permitted.
-
-		boolean componentHasChars = false;
-		for (final byte c : path) {
-			switch (c) {
-			case 0:
-				return false; // NUL is never allowed within the path.
-
-			case '/':
-				if (componentHasChars)
-					componentHasChars = false;
-				else
-					return false;
-				break;
-			case '\\':
-			case ':':
-				// Tree's never have a backslash in them, not even on Windows
-				// but even there we regard it as an invalid path
-				if (SystemReader.getInstance().isWindows())
-					return false;
-				//$FALL-THROUGH$
-			default:
-				componentHasChars = true;
-			}
-		}
-		return componentHasChars;
-	}
-
 	static int getMaximumInfoLength(boolean extended) {
 		return extended ? INFO_LEN_EXTENDED : INFO_LEN;
 	}

org.eclipse.jgit/src/org/eclipse/jgit/lib/ObjectChecker.java

@@ -492,13 +492,27 @@ public class ObjectChecker {
 					throw new CorruptObjectException("invalid name '..'");
 				break;
 			case 4:
-				if (isDotGit(raw, ptr + 1))
+				if (isGit(raw, ptr + 1))
+					throw new CorruptObjectException(String.format(
+							"invalid name '%s'",
+							RawParseUtils.decode(raw, ptr, end)));
+				break;
+			default:
+				if (end - ptr > 4 && isNormalizedGit(raw, ptr + 1, end))
 					throw new CorruptObjectException(String.format(
 							"invalid name '%s'",
 							RawParseUtils.decode(raw, ptr, end)));
 			}
+		} else if (isGitTilde1(raw, ptr, end)) {
+			throw new CorruptObjectException(String.format("invalid name '%s'",
+					RawParseUtils.decode(raw, ptr, end)));
 		}
 
+		if (macosx && isMacHFSGit(raw, ptr, end))
+			throw new CorruptObjectException(String.format(
+					"invalid name '%s' contains ignorable Unicode characters",
+					RawParseUtils.decode(raw, ptr, end)));
+
 		if (windows) {
 			// Windows ignores space and dot at end of file name.
 			if (raw[end - 1] == ' ' || raw[end - 1] == '.')
@@ -509,6 +523,88 @@ public class ObjectChecker {
 		}
 	}
 
+	// Mac's HFS+ folds permutations of ".git" and Unicode ignorable characters
+	// to ".git" therefore we should prevent such names
+	private static boolean isMacHFSGit(byte[] raw, int ptr, int end)
+			throws CorruptObjectException {
+		boolean ignorable = false;
+		byte[] git = new byte[] { '.', 'g', 'i', 't' };
+		int g = 0;
+		while (ptr < end) {
+			switch (raw[ptr]) {
+			case (byte) 0xe2: // http://www.utf8-chartable.de/unicode-utf8-table.pl?start=8192
+				checkTruncatedIgnorableUTF8(raw, ptr, end);
+				switch (raw[ptr + 1]) {
+				case (byte) 0x80:
+					switch (raw[ptr + 2]) {
+					case (byte) 0x8c:	// U+200C 0xe2808c ZERO WIDTH NON-JOINER
+					case (byte) 0x8d:	// U+200D 0xe2808d ZERO WIDTH JOINER
+					case (byte) 0x8e:	// U+200E 0xe2808e LEFT-TO-RIGHT MARK
+					case (byte) 0x8f:	// U+200F 0xe2808f RIGHT-TO-LEFT MARK
+					case (byte) 0xaa:	// U+202A 0xe280aa LEFT-TO-RIGHT EMBEDDING
+					case (byte) 0xab:	// U+202B 0xe280ab RIGHT-TO-LEFT EMBEDDING
+					case (byte) 0xac:	// U+202C 0xe280ac POP DIRECTIONAL FORMATTING
+					case (byte) 0xad:	// U+202D 0xe280ad LEFT-TO-RIGHT OVERRIDE
+					case (byte) 0xae:	// U+202E 0xe280ae RIGHT-TO-LEFT OVERRIDE
+						ignorable = true;
+						ptr += 3;
+						continue;
+					default:
+						return false;
+					}
+				case (byte) 0x81:
+					switch (raw[ptr + 2]) {
+					case (byte) 0xaa:	// U+206A 0xe281aa INHIBIT SYMMETRIC SWAPPING
+					case (byte) 0xab:	// U+206B 0xe281ab ACTIVATE SYMMETRIC SWAPPING
+					case (byte) 0xac:	// U+206C 0xe281ac INHIBIT ARABIC FORM SHAPING
+					case (byte) 0xad:	// U+206D 0xe281ad ACTIVATE ARABIC FORM SHAPING
+					case (byte) 0xae:	// U+206E 0xe281ae NATIONAL DIGIT SHAPES
+					case (byte) 0xaf:	// U+206F 0xe281af NOMINAL DIGIT SHAPES
+						ignorable = true;
+						ptr += 3;
+						continue;
+					default:
+						return false;
+					}
+				}
+				break;
+			case (byte) 0xef: // http://www.utf8-chartable.de/unicode-utf8-table.pl?start=65024
+				checkTruncatedIgnorableUTF8(raw, ptr, end);
+				// U+FEFF 0xefbbbf ZERO WIDTH NO-BREAK SPACE
+				if ((raw[ptr + 1] == (byte) 0xbb)
+						&& (raw[ptr + 2] == (byte) 0xbf)) {
+					ignorable = true;
+					ptr += 3;
+					continue;
+				}
+				return false;
+			default:
+				if (g == 4)
+					return false;
+				if (raw[ptr++] != git[g++])
+					return false;
+			}
+		}
+		if (g == 4 && ignorable)
+			return true;
+		return false;
+	}
+
+	private static void checkTruncatedIgnorableUTF8(byte[] raw, int ptr, int end)
+			throws CorruptObjectException {
+		if ((ptr + 2) >= end)
+			throw new CorruptObjectException(MessageFormat.format(
+				"invalid name contains byte sequence ''{0}'' which is not a valid UTF-8 character",
+					toHexString(raw, ptr, end)));
+	}
+
+	private static String toHexString(byte[] raw, int ptr, int end) {
+		StringBuilder b = new StringBuilder("0x"); //$NON-NLS-1$
+		for (int i = ptr; i < end; i++)
+			b.append(String.format("%02x", Byte.valueOf(raw[i]))); //$NON-NLS-1$
+		return b.toString();
+	}
+
 	private static void checkNotWindowsDevice(byte[] raw, int ptr, int end)
 			throws CorruptObjectException {
 		switch (toLower(raw[ptr])) {
@@ -579,12 +675,36 @@ public class ObjectChecker {
 		return 1 <= c && c <= 31;
 	}
 
-	private boolean isDotGit(byte[] buf, int p) {
-		if (windows || macosx)
-			return toLower(buf[p]) == 'g'
-					&& toLower(buf[p + 1]) == 'i'
-					&& toLower(buf[p + 2]) == 't';
-		return buf[p] == 'g' && buf[p + 1] == 'i' && buf[p + 2] == 't';
+	private static boolean isGit(byte[] buf, int p) {
+		return toLower(buf[p]) == 'g'
+				&& toLower(buf[p + 1]) == 'i'
+				&& toLower(buf[p + 2]) == 't';
+	}
+
+	private static boolean isGitTilde1(byte[] buf, int p, int end) {
+		if (end - p != 5)
+			return false;
+		return toLower(buf[p]) == 'g' && toLower(buf[p + 1]) == 'i'
+				&& toLower(buf[p + 2]) == 't' && buf[p + 3] == '~'
+				&& buf[p + 4] == '1';
+	}
+
+	private static boolean isNormalizedGit(byte[] raw, int ptr, int end) {
+		if (isGit(raw, ptr)) {
+			int dots = 0;
+			boolean space = false;
+			int p = end - 1;
+			for (; (ptr + 2) < p; p--) {
+				if (raw[p] == '.')
+					dots++;
+				else if (raw[p] == ' ')
+					space = true;
+				else
+					break;
+			}
+			return p == ptr + 2 && (dots == 1 || space);
+		}
+		return false;
 	}
 
 	private static char toLower(byte b) {

org.eclipse.jgit/src/org/eclipse/jgit/lib/RebaseTodoFile.java

@@ -43,17 +43,17 @@
 
 package org.eclipse.jgit.lib;
 
-import java.io.BufferedWriter;
 import java.io.File;
 import java.io.FileOutputStream;
 import java.io.IOException;
-import java.io.OutputStreamWriter;
+import java.io.OutputStream;
 import java.util.LinkedList;
 import java.util.List;
 
 import org.eclipse.jgit.lib.RebaseTodoLine.Action;
 import org.eclipse.jgit.util.IO;
 import org.eclipse.jgit.util.RawParseUtils;
+import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 
 /**
  * Offers methods to read and write files formatted like the git-rebase-todo
@@ -216,9 +216,8 @@ public class RebaseTodoFile {
 	 */
 	public void writeRebaseTodoFile(String path, List<RebaseTodoLine> steps,
 			boolean append) throws IOException {
-		BufferedWriter fw = new BufferedWriter(new OutputStreamWriter(
-				new FileOutputStream(new File(repo.getDirectory(), path),
-						append), Constants.CHARACTER_ENCODING));
+		OutputStream fw = new SafeBufferedOutputStream(new FileOutputStream(
+				new File(repo.getDirectory(), path), append));
 		try {
 			StringBuilder sb = new StringBuilder();
 			for (RebaseTodoLine step : steps) {
@@ -232,8 +231,8 @@ public class RebaseTodoFile {
 					sb.append(" "); //$NON-NLS-1$
 					sb.append(step.getShortMessage().trim());
 				}
-				fw.write(sb.toString());
-				fw.newLine();
+				sb.append('\n');
+				fw.write(Constants.encode(sb.toString()));
 			}
 		} finally {
 			fw.close();

org.eclipse.jgit/src/org/eclipse/jgit/patch/FileHeader.java

@@ -267,7 +267,7 @@ public class FileHeader extends DiffEntry {
 		final TemporaryBuffer[] tmp = new TemporaryBuffer[getParentCount() + 1];
 		try {
 			for (int i = 0; i < tmp.length; i++)
-				tmp[i] = new TemporaryBuffer.LocalFile();
+				tmp[i] = new TemporaryBuffer.Heap(Integer.MAX_VALUE);
 			for (final HunkHeader h : getHunks())
 				h.extractFileLines(tmp);
 
@@ -281,11 +281,6 @@ public class FileHeader extends DiffEntry {
 			return r;
 		} catch (IOException ioe) {
 			throw new RuntimeException(JGitText.get().cannotConvertScriptToText, ioe);
-		} finally {
-			for (final TemporaryBuffer b : tmp) {
-				if (b != null)
-					b.destroy();
-			}
 		}
 	}
 

org.eclipse.jgit/src/org/eclipse/jgit/patch/Patch.java

@@ -139,14 +139,10 @@ public class Patch {
 	}
 
 	private static byte[] readFully(final InputStream is) throws IOException {
-		final TemporaryBuffer b = new TemporaryBuffer.LocalFile();
-		try {
-			b.copy(is);
-			b.close();
-			return b.toByteArray();
-		} finally {
-			b.destroy();
-		}
+		TemporaryBuffer b = new TemporaryBuffer.Heap(Integer.MAX_VALUE);
+		b.copy(is);
+		b.close();
+		return b.toByteArray();
 	}
 
 	/**

org.eclipse.jgit/src/org/eclipse/jgit/transport/AmazonS3.java

@@ -182,6 +182,9 @@ public class AmazonS3 {
 	/** Encryption algorithm, may be a null instance that provides pass-through. */
 	private final WalkEncryption encryption;
 
+	/** Directory for locally buffered content. */
+	private final File tmpDir;
+
 	/**
 	 * Create a new S3 client for the supplied user information.
 	 * <p>
@@ -251,6 +254,9 @@ public class AmazonS3 {
 		maxAttempts = Integer.parseInt(props.getProperty(
 				"httpclient.retry-max", "3")); //$NON-NLS-1$ //$NON-NLS-2$
 		proxySelector = ProxySelector.getDefault();
+
+		String tmp = props.getProperty("tmpdir"); //$NON-NLS-1$
+		tmpDir = tmp != null && tmp.length() > 0 ? new File(tmp) : null;
 	}
 
 	/**
@@ -452,7 +458,7 @@ public class AmazonS3 {
 			final ProgressMonitor monitor, final String monitorTask)
 			throws IOException {
 		final MessageDigest md5 = newMD5();
-		final TemporaryBuffer buffer = new TemporaryBuffer.LocalFile() {
+		final TemporaryBuffer buffer = new TemporaryBuffer.LocalFile(tmpDir) {
 			@Override
 			public void close() throws IOException {
 				super.close();

org.eclipse.jgit/src/org/eclipse/jgit/transport/TransportAmazonS3.java

@@ -147,7 +147,11 @@ public class TransportAmazonS3 extends HttpTransport implements WalkTransport {
 			throws NotSupportedException {
 		super(local, uri);
 
-		s3 = new AmazonS3(loadProperties());
+		Properties props = loadProperties();
+		if (!props.contains("tmpdir") && local.getDirectory() != null) //$NON-NLS-1$
+			props.put("tmpdir", local.getDirectory().getPath()); //$NON-NLS-1$
+
+		s3 = new AmazonS3(props);
 		bucket = uri.getHost();
 
 		String p = uri.getPath();

org.eclipse.jgit/src/org/eclipse/jgit/util/TemporaryBuffer.java

@@ -361,7 +361,12 @@ public abstract class TemporaryBuffer extends OutputStream {
 		 */
 		private File onDiskFile;
 
-		/** Create a new temporary buffer. */
+		/**
+		 * Create a new temporary buffer.
+		 *
+		 * @deprecated Use the {@code File} overload to supply a directory.
+		 */
+		@Deprecated
 		public LocalFile() {
 			this(null, DEFAULT_IN_CORE_LIMIT);
 		}
@@ -372,7 +377,9 @@ public abstract class TemporaryBuffer extends OutputStream {
 		 * @param inCoreLimit
 		 *            maximum number of bytes to store in memory. Storage beyond
 		 *            this limit will use the local file.
+		 * @deprecated Use the {@code File,int} overload to supply a directory.
 		 */
+		@Deprecated
 		public LocalFile(final int inCoreLimit) {
 			this(null, inCoreLimit);
 		}