Merge branch 'stable-3.7'

* stable-3.7:
  Add option --orphan for checkout
  Prepare post 3.7.0.201502031740-rc1 builds
  JGit v3.7.0.201502031740-rc1
  Support for the pre-commit hook
  Fix FileUtils.testRelativize_mixedCase which failed on Mac OS X
  Add a hook test
  Introduce hook support into the FS implementations
  If a pack isn't found on disk remove it from pack list

Conflicts:
	org.eclipse.jgit.java7.test/META-INF/MANIFEST.MF

Change-Id: I936acd24d47b911fa30ab29856094e1b2c6ac3db
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

org.eclipse.jgit.java7.test/META-INF/MANIFEST.MF

@@ -6,6 +6,7 @@ Bundle-Version: 4.0.0.qualifier
 Bundle-Vendor: %provider_name
 Bundle-RequiredExecutionEnvironment: JavaSE-1.7
 Import-Package: org.eclipse.jgit.api;version="[4.0.0,4.1.0)",
+ org.eclipse.jgit.api.errors;version="[4.0.0,4.1.0)",
  org.eclipse.jgit.diff;version="[4.0.0,4.1.0)",
  org.eclipse.jgit.dircache;version="[4.0.0,4.1.0)",
  org.eclipse.jgit.internal.storage.file;version="4.0.0",

org.eclipse.jgit.java7.test/src/org/eclipse/jgit/util/HookTest.java

@@ -0,0 +1,136 @@
+/*
+ * Copyright (C) 2014 Matthias Sohn <matthias.sohn@sap.com>
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.util;
+
+import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertNull;
+import static org.junit.Assert.fail;
+
+import java.io.ByteArrayOutputStream;
+import java.io.File;
+import java.io.IOException;
+import java.io.PrintStream;
+
+import org.eclipse.jgit.api.Git;
+import org.eclipse.jgit.api.errors.RejectCommitException;
+import org.eclipse.jgit.junit.JGitTestUtil;
+import org.eclipse.jgit.junit.RepositoryTestCase;
+import org.junit.Assume;
+import org.junit.Test;
+
+public class HookTest extends RepositoryTestCase {
+
+	@Test
+	public void testFindHook() throws Exception {
+		assumeSupportedPlatform();
+
+		Hook h = Hook.PRE_COMMIT;
+		assertNull("no hook should be installed", FS.DETECTED.findHook(db, h));
+		File hookFile = writeHookFile(h.getName(),
+				"#!/bin/bash\necho \"test $1 $2\"");
+		assertEquals("exected to find pre-commit hook", hookFile,
+				FS.DETECTED.findHook(db, h));
+	}
+
+	@Test
+	public void testRunHook() throws Exception {
+		assumeSupportedPlatform();
+
+		Hook h = Hook.PRE_COMMIT;
+		writeHookFile(
+				h.getName(),
+				"#!/bin/sh\necho \"test $1 $2\"\nread INPUT\necho $INPUT\necho 1>&2 \"stderr\"");
+		ByteArrayOutputStream out = new ByteArrayOutputStream();
+		ByteArrayOutputStream err = new ByteArrayOutputStream();
+		ProcessResult res = FS.DETECTED.runIfPresent(db, h, new String[] {
+				"arg1", "arg2" },
+				new PrintStream(out), new PrintStream(err), "stdin");
+		assertEquals("unexpected hook output", "test arg1 arg2\nstdin\n",
+				out.toString("UTF-8"));
+		assertEquals("unexpected output on stderr stream", "stderr\n",
+				err.toString("UTF-8"));
+		assertEquals("unexpected exit code", 0, res.getExitCode());
+		assertEquals("unexpected process status", ProcessResult.Status.OK,
+				res.getStatus());
+	}
+
+	@Test
+	public void testPreCommitHook() throws Exception {
+		assumeSupportedPlatform();
+
+		Hook h = Hook.PRE_COMMIT;
+		writeHookFile(h.getName(),
+				"#!/bin/sh\necho \"test\"\n\necho 1>&2 \"stderr\"\nexit 1");
+		Git git = Git.wrap(db);
+		String path = "a.txt";
+		writeTrashFile(path, "content");
+		git.add().addFilepattern(path).call();
+		ByteArrayOutputStream out = new ByteArrayOutputStream();
+		try {
+			git.commit().setMessage("commit")
+					.setHookOutputStream(new PrintStream(out)).call();
+			fail("expected pre-commit hook to abort commit");
+		} catch (RejectCommitException e) {
+			assertEquals("unexpected error message from pre-commit hook",
+					"Commit rejected by \"pre-commit\" hook.\nstderr\n",
+					e.getMessage());
+			assertEquals("unexpected output from pre-commit hook", "test\n",
+					out.toString());
+		} catch (Throwable e) {
+			fail("unexpected exception thrown by pre-commit hook: " + e);
+		}
+	}
+
+	private File writeHookFile(final String name, final String data)
+			throws IOException {
+		File path = new File(db.getWorkTree() + "/.git/hooks/", name);
+		JGitTestUtil.write(path, data);
+		FS.DETECTED.setExecute(path, true);
+		return path;
+	}
+
+	private void assumeSupportedPlatform() {
+		Assume.assumeTrue(FS.DETECTED instanceof FS_POSIX
+				|| FS.DETECTED instanceof FS_Win32_Java7Cygwin);
+	}
+}

org.eclipse.jgit.java7/src/org/eclipse/jgit/util/FS_POSIX_Java7.java

@@ -53,6 +53,9 @@ import java.nio.file.Path;
 import java.nio.file.attribute.PosixFilePermission;
 import java.util.Set;
 
+import org.eclipse.jgit.lib.Constants;
+import org.eclipse.jgit.lib.Repository;
+
 /**
  * FS implementation for Java7 on unix like systems
  */
@@ -344,4 +347,17 @@ public class FS_POSIX_Java7 extends FS_POSIX {
 	public String normalize(String name) {
 		return FileUtil.normalize(name);
 	}
+
+	/**
+	 * @since 3.7
+	 */
+	@Override
+	public File findHook(Repository repository, Hook hook) {
+		final File gitdir = repository.getDirectory();
+		final Path hookPath = gitdir.toPath().resolve(Constants.HOOKS)
+				.resolve(hook.getName());
+		if (Files.isExecutable(hookPath))
+			return hookPath.toFile();
+		return null;
+	}
 }

org.eclipse.jgit.java7/src/org/eclipse/jgit/util/FS_Win32_Java7Cygwin.java

@@ -45,6 +45,11 @@ package org.eclipse.jgit.util;
 
 import java.io.File;
 import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+
+import org.eclipse.jgit.lib.Constants;
+import org.eclipse.jgit.lib.Repository;
 
 /**
  * FS for Java7 on Windows with Cygwin
@@ -135,4 +140,17 @@ public class FS_Win32_Java7Cygwin extends FS_Win32_Cygwin {
 	public Attributes getAttributes(File path) {
 		return FileUtil.getFileAttributesBasic(this, path);
 	}
+
+	/**
+	 * @since 3.7
+	 */
+	@Override
+	public File findHook(Repository repository, Hook hook) {
+		final File gitdir = repository.getDirectory();
+		final Path hookPath = gitdir.toPath().resolve(Constants.HOOKS)
+				.resolve(hook.getName());
+		if (Files.isExecutable(hookPath))
+			return hookPath.toFile();
+		return null;
+	}
 }

org.eclipse.jgit.pgm.test/tst/org/eclipse/jgit/pgm/CheckoutTest.java

@@ -188,6 +188,18 @@ public class CheckoutTest extends CLIRepositoryTestCase {
 		assertEquals("Hello world a", read(fileA));
 	}
 
+	@Test
+	public void testCheckoutOrphan() throws Exception {
+		Git git = new Git(db);
+		git.commit().setMessage("initial commit").call();
+
+		assertEquals("Switched to a new branch 'new_branch'",
+				execute("git checkout --orphan new_branch"));
+		assertEquals("refs/heads/new_branch", db.getRef("HEAD").getTarget().getName());
+		RevCommit commit = git.commit().setMessage("orphan commit").call();
+		assertEquals(0, commit.getParentCount());
+	}
+
 	/**
 	 * Steps:
 	 * <ol>

org.eclipse.jgit.pgm/resources/org/eclipse/jgit/pgm/internal/CLIText.properties

@@ -345,3 +345,4 @@ usage_updateRemoteRefsFromAnotherRepository=Update remote refs from another repo
 usage_useNameInsteadOfOriginToTrackUpstream=use <name> instead of 'origin' to track upstream
 usage_checkoutBranchAfterClone=checkout named branch instead of remotes's HEAD
 usage_viewCommitHistory=View commit history
+usage_orphan=Create a new orphan branch. The first commit made on this new branch will have no parents amd it will be the root of a new history totally disconnected from other branches and commits.

org.eclipse.jgit.pgm/src/org/eclipse/jgit/pgm/Checkout.java

@@ -71,6 +71,9 @@ class Checkout extends TextBuiltin {
 	@Option(name = "--force", aliases = { "-f" }, usage = "usage_forceCheckout")
 	private boolean force = false;
 
+	@Option(name = "--orphan", usage = "usage_orphan")
+	private boolean orphan = false;
+
 	@Argument(required = true, index = 0, metaVar = "metaVar_name", usage = "usage_checkout")
 	private String name;
 
@@ -95,6 +98,7 @@ class Checkout extends TextBuiltin {
 			command.setCreateBranch(createBranch);
 			command.setName(name);
 			command.setForce(force);
+			command.setOrphan(orphan);
 		}
 		try {
 			String oldBranch = db.getBranch();
@@ -107,10 +111,9 @@ class Checkout extends TextBuiltin {
 						name));
 				return;
 			}
-			if (createBranch)
+			if (createBranch || orphan)
 				outw.println(MessageFormat.format(
-						CLIText.get().switchedToNewBranch,
+						CLIText.get().switchedToNewBranch, name));
-						Repository.shortenRefName(ref.getName())));
 			else
 				outw.println(MessageFormat.format(
 						CLIText.get().switchedToBranch,

org.eclipse.jgit.test/tst/org/eclipse/jgit/util/FileUtilTest.java

@@ -50,6 +50,7 @@ import static org.junit.Assert.fail;
 
 import java.io.File;
 import java.io.IOException;
+import java.util.regex.Matcher;
 
 import org.eclipse.jgit.junit.JGitTestUtil;
 import org.junit.After;
@@ -434,4 +435,71 @@ public class FileUtilTest {
 		String target = fs.readSymLink(new File(trash, "x"));
 		assertEquals("y", target);
 	}
+
+	@Test
+	public void testRelativize_doc() {
+		// This is the javadoc example
+		String base = toOSPathString("c:\\Users\\jdoe\\eclipse\\git\\project");
+		String other = toOSPathString("c:\\Users\\jdoe\\eclipse\\git\\another_project\\pom.xml");
+		String expected = toOSPathString("..\\another_project\\pom.xml");
+
+		String actual = FileUtils.relativize(base, other);
+		assertEquals(expected, actual);
+	}
+
+	@Test
+	public void testRelativize_mixedCase() {
+		SystemReader systemReader = SystemReader.getInstance();
+		String base = toOSPathString("C:\\git\\jgit");
+		String other = toOSPathString("C:\\Git\\test\\d\\f.txt");
+		String expectedCaseInsensitive = toOSPathString("..\\test\\d\\f.txt");
+		String expectedCaseSensitive = toOSPathString("..\\..\\Git\\test\\d\\f.txt");
+
+		if (systemReader.isWindows()) {
+			String actual = FileUtils.relativize(base, other);
+			assertEquals(expectedCaseInsensitive, actual);
+		} else if (systemReader.isMacOS()) {
+			String actual = FileUtils.relativize(base, other);
+			assertEquals(expectedCaseInsensitive, actual);
+		} else {
+			String actual = FileUtils.relativize(base, other);
+			assertEquals(expectedCaseSensitive, actual);
+		}
+	}
+
+	@Test
+	public void testRelativize_scheme() {
+		String base = toOSPathString("file:/home/eclipse/runtime-New_configuration/project_1/file.java");
+		String other = toOSPathString("file:/home/eclipse/runtime-New_configuration/project");
+		// 'file.java' is treated as a folder
+		String expected = toOSPathString("../../project");
+
+		String actual = FileUtils.relativize(base, other);
+		assertEquals(expected, actual);
+	}
+
+	@Test
+	public void testRelativize_equalPaths() {
+		String base = toOSPathString("file:/home/eclipse/runtime-New_configuration/project_1");
+		String other = toOSPathString("file:/home/eclipse/runtime-New_configuration/project_1");
+		String expected = "";
+
+		String actual = FileUtils.relativize(base, other);
+		assertEquals(expected, actual);
+	}
+
+	@Test
+	public void testRelativize_whitespaces() {
+		String base = toOSPathString("/home/eclipse 3.4/runtime New_configuration/project_1");
+		String other = toOSPathString("/home/eclipse 3.4/runtime New_configuration/project_1/file");
+		String expected = "file";
+
+		String actual = FileUtils.relativize(base, other);
+		assertEquals(expected, actual);
+	}
+
+	private String toOSPathString(String path) {
+		return path.replaceAll("/|\\\\",
+				Matcher.quoteReplacement(File.separator));
+	}
 }

org.eclipse.jgit/resources/org/eclipse/jgit/internal/JGitText.properties

@@ -104,6 +104,7 @@ commitAlreadyExists=exists {0}
 commitMessageNotSpecified=commit message not specified
 commitOnRepoWithoutHEADCurrentlyNotSupported=Commit on repo without HEAD currently not supported
 commitAmendOnInitialNotPossible=Amending is not possible on initial commit.
+commitRejectedByHook=Commit rejected by "{0}" hook.\n{1}
 compressingObjects=Compressing objects
 connectionFailed=connection failed
 connectionTimeOut=Connection time out: {0}
@@ -193,6 +194,7 @@ errorListing=Error listing {0}
 errorOccurredDuringUnpackingOnTheRemoteEnd=error occurred during unpacking on the remote end: {0}
 errorReadingInfoRefs=error reading info/refs
 errorSymlinksNotSupported=Symlinks are not supported with this OS/JRE
+exceptionCaughtDuringExecutionOfHook=Exception caught during execution of "{0}" hook.
 exceptionCaughtDuringExecutionOfAddCommand=Exception caught during execution of add command
 exceptionCaughtDuringExecutionOfArchiveCommand=Exception caught during execution of archive command
 exceptionCaughtDuringExecutionOfCherryPickCommand=Exception caught during execution of cherry-pick command. {0}
@@ -206,6 +208,7 @@ exceptionCaughtDuringExecutionOfResetCommand=Exception caught during execution o
 exceptionCaughtDuringExecutionOfRevertCommand=Exception caught during execution of revert command. {0}
 exceptionCaughtDuringExecutionOfRmCommand=Exception caught during execution of rm command
 exceptionCaughtDuringExecutionOfTagCommand=Exception caught during execution of tag command
+exceptionHookExecutionInterrupted=Execution of "{0}" hook interrupted.
 exceptionOccurredDuringAddingOfOptionToALogCommand=Exception occurred during adding of {0} as option to a Log command
 exceptionOccurredDuringReadingOfGIT_DIR=Exception occurred during reading of $GIT_DIR/{0}. {1}
 exceptionWhileReadingPack=ERROR: Exception caught while accessing pack file {0}, the pack file might be corrupt
@@ -392,6 +395,7 @@ packObjectCountMismatch=Pack object count mismatch: pack {0} index {1}: {2}
 packRefs=Pack refs
 packSizeNotSetYet=Pack size not yet set since it has not yet been received
 packTooLargeForIndexVersion1=Pack too large for index version 1
+packWasDeleted=Pack file {0} was deleted, removing it from pack list
 packWriterStatistics=Total {0,number,#0} (delta {1,number,#0}), reused {2,number,#0} (delta {3,number,#0})
 panicCantRenameIndexFile=Panic: index file {0} must be renamed to replace {1}; until then repository is corrupt
 patchApplyException=Cannot apply: {0}

org.eclipse.jgit/src/org/eclipse/jgit/api/CherryPickCommand.java

@@ -169,7 +169,8 @@ public class CherryPickCommand extends GitCommand<CherryPickResult> {
 								.setMessage(srcCommit.getFullMessage())
 								.setReflogComment(reflogPrefix + " " //$NON-NLS-1$
 										+ srcCommit.getShortMessage())
-								.setAuthor(srcCommit.getAuthorIdent()).call();
+								.setAuthor(srcCommit.getAuthorIdent())
+								.setNoVerify(true).call();
 					cherryPickedRefs.add(src);
 				} else {
 					if (merger.failed())

org.eclipse.jgit/src/org/eclipse/jgit/api/CommitCommand.java

@@ -42,8 +42,10 @@
  */
 package org.eclipse.jgit.api;
 
+import java.io.ByteArrayOutputStream;
 import java.io.IOException;
 import java.io.InputStream;
+import java.io.PrintStream;
 import java.text.MessageFormat;
 import java.util.ArrayList;
 import java.util.Collections;
@@ -56,6 +58,7 @@ import org.eclipse.jgit.api.errors.JGitInternalException;
 import org.eclipse.jgit.api.errors.NoFilepatternException;
 import org.eclipse.jgit.api.errors.NoHeadException;
 import org.eclipse.jgit.api.errors.NoMessageException;
+import org.eclipse.jgit.api.errors.RejectCommitException;
 import org.eclipse.jgit.api.errors.UnmergedPathsException;
 import org.eclipse.jgit.api.errors.WrongRepositoryStateException;
 import org.eclipse.jgit.dircache.DirCache;
@@ -84,6 +87,9 @@ import org.eclipse.jgit.treewalk.CanonicalTreeParser;
 import org.eclipse.jgit.treewalk.FileTreeIterator;
 import org.eclipse.jgit.treewalk.TreeWalk;
 import org.eclipse.jgit.util.ChangeIdUtil;
+import org.eclipse.jgit.util.FS;
+import org.eclipse.jgit.util.Hook;
+import org.eclipse.jgit.util.ProcessResult;
 
 /**
  * A class used to execute a {@code Commit} command. It has setters for all
@@ -119,11 +125,20 @@ public class CommitCommand extends GitCommand<RevCommit> {
 
 	private String reflogComment;
 
+	/**
+	 * Setting this option bypasses the {@link Hook#PRE_COMMIT pre-commit} and
+	 * {@link Hook#COMMIT_MSG commit-msg} hooks.
+	 */
+	private boolean noVerify;
+
+	private PrintStream hookOutRedirect;
+
 	/**
 	 * @param repo
 	 */
 	protected CommitCommand(Repository repo) {
 		super(repo);
+		hookOutRedirect = System.out;
 	}
 
 	/**
@@ -144,11 +159,14 @@ public class CommitCommand extends GitCommand<RevCommit> {
 	 *             else
 	 * @throws WrongRepositoryStateException
 	 *             when repository is not in the right state for committing
+	 * @throws RejectCommitException
+	 *             if there are either pre-commit or commit-msg hooks present in
+	 *             the repository and at least one of them rejects the commit.
 	 */
 	public RevCommit call() throws GitAPIException, NoHeadException,
 			NoMessageException, UnmergedPathsException,
-			ConcurrentRefUpdateException,
+			ConcurrentRefUpdateException, WrongRepositoryStateException,
-			WrongRepositoryStateException {
+			RejectCommitException {
 		checkCallable();
 		Collections.sort(only);
 
@@ -160,6 +178,23 @@ public class CommitCommand extends GitCommand<RevCommit> {
 				throw new WrongRepositoryStateException(MessageFormat.format(
 						JGitText.get().cannotCommitOnARepoWithState,
 						state.name()));
+
+			if (!noVerify) {
+				final ByteArrayOutputStream errorByteArray = new ByteArrayOutputStream();
+				final PrintStream hookErrRedirect = new PrintStream(
+						errorByteArray);
+				ProcessResult preCommitHookResult = FS.DETECTED.runIfPresent(
+						repo, Hook.PRE_COMMIT, new String[0], hookOutRedirect,
+						hookErrRedirect, null);
+				if (preCommitHookResult.getStatus() == ProcessResult.Status.OK
+						&& preCommitHookResult.getExitCode() != 0) {
+					String errorMessage = MessageFormat.format(
+							JGitText.get().commitRejectedByHook, Hook.PRE_COMMIT.getName(),
+							errorByteArray.toString());
+					throw new RejectCommitException(errorMessage);
+				}
+			}
+
 			processOptions(state, rw);
 
 			if (all && !repo.isBare() && repo.getWorkTree() != null) {
@@ -733,4 +768,36 @@ public class CommitCommand extends GitCommand<RevCommit> {
 		return this;
 	}
 
+	/**
+	 * Sets the {@link #noVerify} option on this commit command.
+	 * <p>
+	 * Both the {@link Hook#PRE_COMMIT pre-commit} and {@link Hook#COMMIT_MSG
+	 * commit-msg} hooks can block a commit by their return value; setting this
+	 * option to <code>true</code> will bypass these two hooks.
+	 * </p>
+	 *
+	 * @param noVerify
+	 *            Whether this commit should be verified by the pre-commit and
+	 *            commit-msg hooks.
+	 * @return {@code this}
+	 * @since 3.7
+	 */
+	public CommitCommand setNoVerify(boolean noVerify) {
+		this.noVerify = noVerify;
+		return this;
+	}
+
+	/**
+	 * Set the output stream for hook scripts executed by this command. If not
+	 * set it defaults to {@code System.out}.
+	 *
+	 * @param hookStdOut
+	 *            the output stream for hook scripts executed by this command
+	 * @return {@code this}
+	 * @since 3.7
+	 */
+	public CommitCommand setHookOutputStream(PrintStream hookStdOut) {
+		this.hookOutRedirect = hookStdOut;
+		return this;
+	}
 }

org.eclipse.jgit/src/org/eclipse/jgit/api/RebaseCommand.java

@@ -462,7 +462,7 @@ public class RebaseCommand extends GitCommand<RebaseResult> {
 			String newMessage = interactiveHandler
 					.modifyCommitMessage(oldMessage);
 			newHead = new Git(repo).commit().setMessage(newMessage)
-					.setAmend(true).call();
+					.setAmend(true).setNoVerify(true).call();
 			return null;
 		case EDIT:
 			rebaseState.createFile(AMEND, commitToPick.name());
@@ -768,15 +768,14 @@ public class RebaseCommand extends GitCommand<RebaseResult> {
 			}
 			retNewHead = new Git(repo).commit()
 					.setMessage(stripCommentLines(commitMessage))
-					.setAmend(true).call();
+					.setAmend(true).setNoVerify(true).call();
 			rebaseState.getFile(MESSAGE_SQUASH).delete();
 			rebaseState.getFile(MESSAGE_FIXUP).delete();
 
 		} else {
 			// Next step is either Squash or Fixup
-			retNewHead = new Git(repo).commit()
+			retNewHead = new Git(repo).commit().setMessage(commitMessage)
-					.setMessage(commitMessage).setAmend(true)
+					.setAmend(true).setNoVerify(true).call();
-					.call();
 		}
 		return retNewHead;
 	}

org.eclipse.jgit/src/org/eclipse/jgit/api/errors/RejectCommitException.java

@@ -0,0 +1,61 @@
+/*
+ * Copyright (C) 2015 Obeo.
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.api.errors;
+
+/**
+ * Exception thrown when a commit is rejected by a hook (either
+ * {@link org.eclipse.jgit.util.Hook#PRE_COMMIT pre-commit} or
+ * {@link org.eclipse.jgit.util.Hook#COMMIT_MSG commit-msg}).
+ *
+ * @since 3.7
+ */
+public class RejectCommitException extends GitAPIException {
+	private static final long serialVersionUID = 1L;
+
+	/**
+	 * @param message
+	 */
+	public RejectCommitException(String message) {
+		super(message);
+	}
+}

org.eclipse.jgit/src/org/eclipse/jgit/internal/JGitText.java

@@ -163,6 +163,7 @@ public class JGitText extends TranslationBundle {
 	/***/ public String commitMessageNotSpecified;
 	/***/ public String commitOnRepoWithoutHEADCurrentlyNotSupported;
 	/***/ public String commitAmendOnInitialNotPossible;
+	/***/ public String commitRejectedByHook;
 	/***/ public String compressingObjects;
 	/***/ public String connectionFailed;
 	/***/ public String connectionTimeOut;
@@ -252,6 +253,7 @@ public class JGitText extends TranslationBundle {
 	/***/ public String errorOccurredDuringUnpackingOnTheRemoteEnd;
 	/***/ public String errorReadingInfoRefs;
 	/***/ public String errorSymlinksNotSupported;
+	/***/ public String exceptionCaughtDuringExecutionOfHook;
 	/***/ public String exceptionCaughtDuringExecutionOfAddCommand;
 	/***/ public String exceptionCaughtDuringExecutionOfArchiveCommand;
 	/***/ public String exceptionCaughtDuringExecutionOfCherryPickCommand;
@@ -265,6 +267,7 @@ public class JGitText extends TranslationBundle {
 	/***/ public String exceptionCaughtDuringExecutionOfRevertCommand;
 	/***/ public String exceptionCaughtDuringExecutionOfRmCommand;
 	/***/ public String exceptionCaughtDuringExecutionOfTagCommand;
+	/***/ public String exceptionHookExecutionInterrupted;
 	/***/ public String exceptionOccurredDuringAddingOfOptionToALogCommand;
 	/***/ public String exceptionOccurredDuringReadingOfGIT_DIR;
 	/***/ public String exceptionWhileReadingPack;
@@ -451,6 +454,7 @@ public class JGitText extends TranslationBundle {
 	/***/ public String packRefs;
 	/***/ public String packSizeNotSetYet;
 	/***/ public String packTooLargeForIndexVersion1;
+	/***/ public String packWasDeleted;
 	/***/ public String packWriterStatistics;
 	/***/ public String panicCantRenameIndexFile;
 	/***/ public String patchApplyException;

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/file/ObjectDirectory.java

@@ -557,6 +557,9 @@ public class ObjectDirectory extends FileObjectDatabase {
 			tmpl = JGitText.get().corruptPack;
 			// Assume the pack is corrupted, and remove it from the list.
 			removePack(p);
+		} else if (e instanceof FileNotFoundException) {
+			tmpl = JGitText.get().packWasDeleted;
+			removePack(p);
 		} else {
 			tmpl = JGitText.get().exceptionWhileReadingPack;
 			// Don't remove the pack from the list, as the error may be

org.eclipse.jgit/src/org/eclipse/jgit/lib/Constants.java

@@ -386,6 +386,13 @@ public final class Constants {
 	 */
 	public static final String MODULES = "modules";
 
+	/**
+	 * Name of the folder (inside gitDir) where the hooks are stored.
+	 *
+	 * @since 3.7
+	 */
+	public static final String HOOKS = "hooks";
+
 	/**
 	 * Create a new digest function for objects.
 	 *

org.eclipse.jgit/src/org/eclipse/jgit/util/FS.java

@@ -44,18 +44,31 @@
 package org.eclipse.jgit.util;
 
 import java.io.BufferedReader;
+import java.io.BufferedWriter;
 import java.io.File;
 import java.io.IOException;
 import java.io.InputStream;
 import java.io.InputStreamReader;
+import java.io.OutputStream;
+import java.io.OutputStreamWriter;
+import java.io.PrintStream;
+import java.io.PrintWriter;
 import java.security.AccessController;
 import java.security.PrivilegedAction;
 import java.text.MessageFormat;
 import java.util.Arrays;
+import java.util.concurrent.Callable;
+import java.util.concurrent.ExecutorService;
+import java.util.concurrent.Executors;
+import java.util.concurrent.TimeUnit;
 import java.util.concurrent.atomic.AtomicBoolean;
 
+import org.eclipse.jgit.api.errors.JGitInternalException;
 import org.eclipse.jgit.errors.SymlinksNotSupportedException;
 import org.eclipse.jgit.internal.JGitText;
+import org.eclipse.jgit.lib.Constants;
+import org.eclipse.jgit.lib.Repository;
+import org.eclipse.jgit.util.ProcessResult.Status;
 
 /** Abstraction to support various file system operations not in Java. */
 public abstract class FS {
@@ -613,6 +626,288 @@ public abstract class FS {
 				JGitText.get().errorSymlinksNotSupported);
 	}
 
+	/**
+	 * See {@link FileUtils#relativize(String, String)}.
+	 *
+	 * @param base
+	 *            The path against which <code>other</code> should be
+	 *            relativized.
+	 * @param other
+	 *            The path that will be made relative to <code>base</code>.
+	 * @return A relative path that, when resolved against <code>base</code>,
+	 *         will yield the original <code>other</code>.
+	 * @see FileUtils#relativize(String, String)
+	 * @since 3.7
+	 */
+	public String relativize(String base, String other) {
+		return FileUtils.relativize(base, other);
+	}
+
+	/**
+	 * Checks whether the given hook is defined for the given repository, then
+	 * runs it with the given arguments.
+	 * <p>
+	 * The hook's standard output and error streams will be redirected to
+	 * <code>System.out</code> and <code>System.err</code> respectively. The
+	 * hook will have no stdin.
+	 * </p>
+	 *
+	 * @param repository
+	 *            The repository for which a hook should be run.
+	 * @param hook
+	 *            The hook to be executed.
+	 * @param args
+	 *            Arguments to pass to this hook. Cannot be <code>null</code>,
+	 *            but can be an empty array.
+	 * @return The ProcessResult describing this hook's execution.
+	 * @throws JGitInternalException
+	 *             if we fail to run the hook somehow. Causes may include an
+	 *             interrupted process or I/O errors.
+	 * @since 3.7
+	 */
+	public ProcessResult runIfPresent(Repository repository, final Hook hook,
+			String[] args) throws JGitInternalException {
+		return runIfPresent(repository, hook, args, System.out, System.err,
+				null);
+	}
+
+	/**
+	 * Checks whether the given hook is defined for the given repository, then
+	 * runs it with the given arguments.
+	 *
+	 * @param repository
+	 *            The repository for which a hook should be run.
+	 * @param hook
+	 *            The hook to be executed.
+	 * @param args
+	 *            Arguments to pass to this hook. Cannot be <code>null</code>,
+	 *            but can be an empty array.
+	 * @param outRedirect
+	 *            A print stream on which to redirect the hook's stdout. Can be
+	 *            <code>null</code>, in which case the hook's standard output
+	 *            will be lost.
+	 * @param errRedirect
+	 *            A print stream on which to redirect the hook's stderr. Can be
+	 *            <code>null</code>, in which case the hook's standard error
+	 *            will be lost.
+	 * @param stdinArgs
+	 *            A string to pass on to the standard input of the hook. May be
+	 *            <code>null</code>.
+	 * @return The ProcessResult describing this hook's execution.
+	 * @throws JGitInternalException
+	 *             if we fail to run the hook somehow. Causes may include an
+	 *             interrupted process or I/O errors.
+	 * @since 3.7
+	 */
+	public ProcessResult runIfPresent(Repository repository, final Hook hook,
+			String[] args, PrintStream outRedirect, PrintStream errRedirect,
+			String stdinArgs) throws JGitInternalException {
+		return new ProcessResult(Status.NOT_SUPPORTED);
+	}
+
+	/**
+	 * See
+	 * {@link #runIfPresent(Repository, Hook, String[], PrintStream, PrintStream, String)}
+	 * . Should only be called by FS supporting shell scripts execution.
+	 *
+	 * @param repository
+	 *            The repository for which a hook should be run.
+	 * @param hook
+	 *            The hook to be executed.
+	 * @param args
+	 *            Arguments to pass to this hook. Cannot be <code>null</code>,
+	 *            but can be an empty array.
+	 * @param outRedirect
+	 *            A print stream on which to redirect the hook's stdout. Can be
+	 *            <code>null</code>, in which case the hook's standard output
+	 *            will be lost.
+	 * @param errRedirect
+	 *            A print stream on which to redirect the hook's stderr. Can be
+	 *            <code>null</code>, in which case the hook's standard error
+	 *            will be lost.
+	 * @param stdinArgs
+	 *            A string to pass on to the standard input of the hook. May be
+	 *            <code>null</code>.
+	 * @return The ProcessResult describing this hook's execution.
+	 * @throws JGitInternalException
+	 *             if we fail to run the hook somehow. Causes may include an
+	 *             interrupted process or I/O errors.
+	 * @since 3.7
+	 */
+	protected ProcessResult internalRunIfPresent(Repository repository,
+			final Hook hook, String[] args, PrintStream outRedirect,
+			PrintStream errRedirect, String stdinArgs)
+			throws JGitInternalException {
+		final File hookFile = findHook(repository, hook);
+		if (hookFile == null)
+			return new ProcessResult(Status.NOT_PRESENT);
+
+		final String hookPath = hookFile.getAbsolutePath();
+		final File runDirectory;
+		if (repository.isBare())
+			runDirectory = repository.getDirectory();
+		else
+			runDirectory = repository.getWorkTree();
+		final String cmd = relativize(runDirectory.getAbsolutePath(),
+				hookPath);
+		ProcessBuilder hookProcess = runInShell(cmd, args);
+		hookProcess.directory(runDirectory);
+		try {
+			return new ProcessResult(runProcess(hookProcess, outRedirect,
+					errRedirect, stdinArgs), Status.OK);
+		} catch (IOException e) {
+			throw new JGitInternalException(MessageFormat.format(
+					JGitText.get().exceptionCaughtDuringExecutionOfHook,
+					hook.getName()), e);
+		} catch (InterruptedException e) {
+			throw new JGitInternalException(MessageFormat.format(
+					JGitText.get().exceptionHookExecutionInterrupted,
+					hook.getName()), e);
+		}
+	}
+
+
+	/**
+	 * Tries to find a hook matching the given one in the given repository.
+	 *
+	 * @param repository
+	 *            The repository within which to find a hook.
+	 * @param hook
+	 *            The hook we're trying to find.
+	 * @return The {@link File} containing this particular hook if it exists in
+	 *         the given repository, <code>null</code> otherwise.
+	 * @since 3.7
+	 */
+	public File findHook(Repository repository, final Hook hook) {
+		final File hookFile = new File(new File(repository.getDirectory(),
+				Constants.HOOKS), hook.getName());
+		return hookFile.isFile() ? hookFile : null;
+	}
+
+	/**
+	 * Runs the given process until termination, clearing its stdout and stderr
+	 * streams on-the-fly.
+	 *
+	 * @param hookProcessBuilder
+	 *            The process builder configured for this hook.
+	 * @param outRedirect
+	 *            A print stream on which to redirect the hook's stdout. Can be
+	 *            <code>null</code>, in which case the hook's standard output
+	 *            will be lost.
+	 * @param errRedirect
+	 *            A print stream on which to redirect the hook's stderr. Can be
+	 *            <code>null</code>, in which case the hook's standard error
+	 *            will be lost.
+	 * @param stdinArgs
+	 *            A string to pass on to the standard input of the hook. Can be
+	 *            <code>null</code>.
+	 * @return the exit value of this hook.
+	 * @throws IOException
+	 *             if an I/O error occurs while executing this hook.
+	 * @throws InterruptedException
+	 *             if the current thread is interrupted while waiting for the
+	 *             process to end.
+	 * @since 3.7
+	 */
+	protected int runProcess(ProcessBuilder hookProcessBuilder,
+			OutputStream outRedirect, OutputStream errRedirect, String stdinArgs)
+			throws IOException, InterruptedException {
+		final ExecutorService executor = Executors.newFixedThreadPool(2);
+		Process process = null;
+		// We'll record the first I/O exception that occurs, but keep on trying
+		// to dispose of our open streams and file handles
+		IOException ioException = null;
+		try {
+			process = hookProcessBuilder.start();
+			final Callable<Void> errorGobbler = new StreamGobbler(
+					process.getErrorStream(), errRedirect);
+			final Callable<Void> outputGobbler = new StreamGobbler(
+					process.getInputStream(), outRedirect);
+			executor.submit(errorGobbler);
+			executor.submit(outputGobbler);
+			if (stdinArgs != null) {
+				final PrintWriter stdinWriter = new PrintWriter(
+						process.getOutputStream());
+				stdinWriter.print(stdinArgs);
+				stdinWriter.flush();
+				// We are done with this hook's input. Explicitly close its
+				// stdin now to kick off any blocking read the hook might have.
+				stdinWriter.close();
+			}
+			return process.waitFor();
+		} catch (IOException e) {
+			ioException = e;
+		} finally {
+			shutdownAndAwaitTermination(executor);
+			if (process != null) {
+				try {
+					process.waitFor();
+				} catch (InterruptedException e) {
+					// Thrown by the outer try.
+					// Swallow this one to carry on our cleanup, and clear the
+					// interrupted flag (processes throw the exception without
+					// clearing the flag).
+					Thread.interrupted();
+				}
+				// A process doesn't clean its own resources even when destroyed
+				// Explicitly try and close all three streams, preserving the
+				// outer I/O exception if any.
+				try {
+					process.getErrorStream().close();
+				} catch (IOException e) {
+					ioException = ioException != null ? ioException : e;
+				}
+				try {
+					process.getInputStream().close();
+				} catch (IOException e) {
+					ioException = ioException != null ? ioException : e;
+				}
+				try {
+					process.getOutputStream().close();
+				} catch (IOException e) {
+					ioException = ioException != null ? ioException : e;
+				}
+				process.destroy();
+			}
+		}
+		// We can only be here if the outer try threw an IOException.
+		throw ioException;
+	}
+
+	/**
+	 * Shuts down an {@link ExecutorService} in two phases, first by calling
+	 * {@link ExecutorService#shutdown() shutdown} to reject incoming tasks, and
+	 * then calling {@link ExecutorService#shutdownNow() shutdownNow}, if
+	 * necessary, to cancel any lingering tasks. Returns true if the pool has
+	 * been properly shutdown, false otherwise.
+	 * <p>
+	 *
+	 * @param pool
+	 *            the pool to shutdown
+	 * @return <code>true</code> if the pool has been properly shutdown,
+	 *         <code>false</code> otherwise.
+	 */
+	private static boolean shutdownAndAwaitTermination(ExecutorService pool) {
+		boolean hasShutdown = true;
+		pool.shutdown(); // Disable new tasks from being submitted
+		try {
+			// Wait a while for existing tasks to terminate
+			if (!pool.awaitTermination(5, TimeUnit.SECONDS)) {
+				pool.shutdownNow(); // Cancel currently executing tasks
+				// Wait a while for tasks to respond to being canceled
+				if (!pool.awaitTermination(5, TimeUnit.SECONDS))
+					hasShutdown = false;
+			}
+		} catch (InterruptedException ie) {
+			// (Re-)Cancel if current thread also interrupted
+			pool.shutdownNow();
+			// Preserve interrupt status
+			Thread.currentThread().interrupt();
+			hasShutdown = false;
+		}
+		return hasShutdown;
+	}
+
 	/**
 	 * Initialize a ProcesssBuilder to run a command using the system shell.
 	 *
@@ -802,4 +1097,50 @@ public abstract class FS {
 	public String normalize(String name) {
 		return name;
 	}
+
+	/**
+	 * This runnable will consume an input stream's content into an output
+	 * stream as soon as it gets available.
+	 * <p>
+	 * Typically used to empty processes' standard output and error, preventing
+	 * them to choke.
+	 * </p>
+	 * <p>
+	 * <b>Note</b> that a {@link StreamGobbler} will never close either of its
+	 * streams.
+	 * </p>
+	 */
+	private static class StreamGobbler implements Callable<Void> {
+		private final BufferedReader reader;
+
+		private final BufferedWriter writer;
+
+		public StreamGobbler(InputStream stream, OutputStream output) {
+			this.reader = new BufferedReader(new InputStreamReader(stream));
+			if (output == null)
+				this.writer = null;
+			else
+				this.writer = new BufferedWriter(new OutputStreamWriter(output));
+		}
+
+		public Void call() throws IOException {
+			boolean writeFailure = false;
+
+			String line = null;
+			while ((line = reader.readLine()) != null) {
+				// Do not try to write again after a failure, but keep reading
+				// as long as possible to prevent the input stream from choking.
+				if (!writeFailure && writer != null) {
+					try {
+						writer.write(line);
+						writer.newLine();
+						writer.flush();
+					} catch (IOException e) {
+						writeFailure = true;
+					}
+				}
+			}
+			return null;
+		}
+	}
 }

org.eclipse.jgit/src/org/eclipse/jgit/util/FS_POSIX.java

@@ -44,11 +44,14 @@ package org.eclipse.jgit.util;
 
 import java.io.File;
 import java.io.IOException;
+import java.io.PrintStream;
 import java.nio.charset.Charset;
 import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.List;
 
+import org.eclipse.jgit.api.errors.JGitInternalException;
+import org.eclipse.jgit.lib.Repository;
 
 /**
  * Base FS for POSIX based systems
@@ -121,4 +124,15 @@ public abstract class FS_POSIX extends FS {
 		proc.command(argv);
 		return proc;
 	}
+
+	/**
+	 * @since 3.7
+	 */
+	@Override
+	public ProcessResult runIfPresent(Repository repository, Hook hook,
+			String[] args, PrintStream outRedirect, PrintStream errRedirect,
+			String stdinArgs) throws JGitInternalException {
+		return internalRunIfPresent(repository, hook, args, outRedirect,
+				errRedirect, stdinArgs);
+	}
 }

org.eclipse.jgit/src/org/eclipse/jgit/util/FS_Win32_Cygwin.java

@@ -44,12 +44,15 @@
 package org.eclipse.jgit.util;
 
 import java.io.File;
+import java.io.PrintStream;
 import java.security.AccessController;
 import java.security.PrivilegedAction;
 import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.List;
 
+import org.eclipse.jgit.api.errors.JGitInternalException;
+import org.eclipse.jgit.lib.Repository;
 
 /**
  * FS implementation for Cygwin on Windows
@@ -135,4 +138,24 @@ public class FS_Win32_Cygwin extends FS_Win32 {
 		proc.command(argv);
 		return proc;
 	}
+
+	/**
+	 * @since 3.7
+	 */
+	@Override
+	public String relativize(String base, String other) {
+		final String relativized = super.relativize(base, other);
+		return relativized.replace(File.separatorChar, '/');
+	}
+
+	/**
+	 * @since 3.7
+	 */
+	@Override
+	public ProcessResult runIfPresent(Repository repository, Hook hook,
+			String[] args, PrintStream outRedirect, PrintStream errRedirect,
+			String stdinArgs) throws JGitInternalException {
+		return internalRunIfPresent(repository, hook, args, outRedirect,
+				errRedirect, stdinArgs);
+	}
 }

org.eclipse.jgit/src/org/eclipse/jgit/util/FileUtils.java

@@ -51,6 +51,7 @@ import java.nio.channels.FileLock;
 import java.text.MessageFormat;
 import java.util.ArrayList;
 import java.util.List;
+import java.util.regex.Pattern;
 
 import org.eclipse.jgit.internal.JGitText;
 
@@ -387,4 +388,69 @@ public class FileUtils {
 		}
 		throw new IOException(JGitText.get().cannotCreateTempDir);
 	}
+
+	/**
+	 * This will try and make a given path relative to another.
+	 * <p>
+	 * For example, if this is called with the two following paths :
+	 *
+	 * <pre>
+	 * <code>base = "c:\\Users\\jdoe\\eclipse\\git\\project"</code>
+	 * <code>other = "c:\\Users\\jdoe\\eclipse\\git\\another_project\\pom.xml"</code>
+	 * </pre>
+	 *
+	 * This will return "..\\another_project\\pom.xml".
+	 * </p>
+	 * <p>
+	 * This method uses {@link File#separator} to split the paths into segments.
+	 * </p>
+	 * <p>
+	 * <b>Note</b> that this will return the empty String if <code>base</code>
+	 * and <code>other</code> are equal.
+	 * </p>
+	 *
+	 * @param base
+	 *            The path against which <code>other</code> should be
+	 *            relativized. This will be assumed to denote the path to a
+	 *            folder and not a file.
+	 * @param other
+	 *            The path that will be made relative to <code>base</code>.
+	 * @return A relative path that, when resolved against <code>base</code>,
+	 *         will yield the original <code>other</code>.
+	 * @since 3.7
+	 */
+	public static String relativize(String base, String other) {
+		if (base.equals(other))
+			return ""; //$NON-NLS-1$
+
+		final boolean ignoreCase = !FS.DETECTED.isCaseSensitive();
+		final String[] baseSegments = base.split(Pattern.quote(File.separator));
+		final String[] otherSegments = other.split(Pattern
+				.quote(File.separator));
+
+		int commonPrefix = 0;
+		while (commonPrefix < baseSegments.length
+				&& commonPrefix < otherSegments.length) {
+			if (ignoreCase
+					&& baseSegments[commonPrefix]
+							.equalsIgnoreCase(otherSegments[commonPrefix]))
+				commonPrefix++;
+			else if (!ignoreCase
+					&& baseSegments[commonPrefix]
+							.equals(otherSegments[commonPrefix]))
+				commonPrefix++;
+			else
+				break;
+		}
+
+		final StringBuilder builder = new StringBuilder();
+		for (int i = commonPrefix; i < baseSegments.length; i++)
+			builder.append("..").append(File.separator); //$NON-NLS-1$
+		for (int i = commonPrefix; i < otherSegments.length; i++) {
+			builder.append(otherSegments[i]);
+			if (i < otherSegments.length - 1)
+				builder.append(File.separator);
+		}
+		return builder.toString();
+	}
 }

org.eclipse.jgit/src/org/eclipse/jgit/util/Hook.java

@@ -0,0 +1,149 @@
+/*
+ * Copyright (C) 2014 Obeo.
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.util;
+
+/**
+ * An enum describing the different hooks a user can implement to customize his
+ * repositories.
+ *
+ * @since 3.7
+ */
+public enum Hook {
+	/**
+	 * Literal for the "pre-commit" git hook.
+	 * <p>
+	 * This hook is invoked by git commit, and can be bypassed with the
+	 * "no-verify" option. It takes no parameter, and is invoked before
+	 * obtaining the proposed commit log message and making a commit.
+	 * </p>
+	 * <p>
+	 * A non-zero exit code from the called hook means that the commit should be
+	 * aborted.
+	 * </p>
+	 */
+	PRE_COMMIT("pre-commit"), //$NON-NLS-1$
+
+	/**
+	 * Literal for the "prepare-commit-msg" git hook.
+	 * <p>
+	 * This hook is invoked by git commit right after preparing the default
+	 * message, and before any editing possibility is displayed to the user.
+	 * </p>
+	 * <p>
+	 * A non-zero exit code from the called hook means that the commit should be
+	 * aborted.
+	 * </p>
+	 */
+	PREPARE_COMMIT_MSG("prepare-commit-msg"), //$NON-NLS-1$
+
+	/**
+	 * Literal for the "commit-msg" git hook.
+	 * <p>
+	 * This hook is invoked by git commit, and can be bypassed with the
+	 * "no-verify" option. Its single parameter is the path to the file
+	 * containing the prepared commit message (typically
+	 * "&lt;gitdir>/COMMIT-EDITMSG").
+	 * </p>
+	 * <p>
+	 * A non-zero exit code from the called hook means that the commit should be
+	 * aborted.
+	 * </p>
+	 */
+	COMMIT_MSG("commit-msg"), //$NON-NLS-1$
+
+	/**
+	 * Literal for the "post-commit" git hook.
+	 * <p>
+	 * This hook is invoked by git commit. It takes no parameter and is invoked
+	 * after a commit has been made.
+	 * </p>
+	 * <p>
+	 * The exit code of this hook has no significance.
+	 * </p>
+	 */
+	POST_COMMIT("post-commit"), //$NON-NLS-1$
+
+	/**
+	 * Literal for the "post-rewrite" git hook.
+	 * <p>
+	 * This hook is invoked after commands that rewrite commits (currently, only
+	 * "git rebase" and "git commit --amend"). It a single argument denoting the
+	 * source of the call (one of <code>rebase</code> or <code>amend</code>). It
+	 * then accepts a list of rewritten commits through stdin, in the form
+	 * <code>&lt;old SHA-1> &lt;new SHA-1>LF</code>.
+	 * </p>
+	 * <p>
+	 * The exit code of this hook has no significance.
+	 * </p>
+	 */
+	POST_REWRITE("post-rewrite"), //$NON-NLS-1$
+
+	/**
+	 * Literal for the "pre-rebase" git hook.
+	 * <p>
+	 * </p>
+	 * This hook is invoked right before the rebase operation runs. It accepts
+	 * up to two parameters, the first being the upstream from which the branch
+	 * to rebase has been forked. If the tip of the series of commits to rebase
+	 * is HEAD, the other parameter is unset. Otherwise, that tip is passed as
+	 * the second parameter of the script.
+	 * <p>
+	 * A non-zero exit code from the called hook means that the rebase should be
+	 * aborted.
+	 * </p>
+	 */
+	PRE_REBASE("pre-rebase"); //$NON-NLS-1$
+
+	private final String name;
+
+	private Hook(String name) {
+		this.name = name;
+	}
+
+	/**
+	 * @return The name of this hook.
+	 */
+	public String getName() {
+		return name;
+	}
+}

org.eclipse.jgit/src/org/eclipse/jgit/util/ProcessResult.java

@@ -0,0 +1,112 @@
+/*
+ * Copyright (C) 2014 Obeo.
+ * and other copyright owners as documented in the project's IP log.
+ *
+ * This program and the accompanying materials are made available
+ * under the terms of the Eclipse Distribution License v1.0 which
+ * accompanies this distribution, is reproduced below, and is
+ * available at http://www.eclipse.org/org/documents/edl-v10.php
+ *
+ * All rights reserved.
+ *
+ * Redistribution and use in source and binary forms, with or
+ * without modification, are permitted provided that the following
+ * conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright
+ *   notice, this list of conditions and the following disclaimer.
+ *
+ * - Redistributions in binary form must reproduce the above
+ *   copyright notice, this list of conditions and the following
+ *   disclaimer in the documentation and/or other materials provided
+ *   with the distribution.
+ *
+ * - Neither the name of the Eclipse Foundation, Inc. nor the
+ *   names of its contributors may be used to endorse or promote
+ *   products derived from this software without specific prior
+ *   written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
+ * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
+ * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+ * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
+ * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
+ * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+ * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
+ * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+ * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ */
+package org.eclipse.jgit.util;
+
+/**
+ * Describes the result of running an external process.
+ *
+ * @since 3.7
+ */
+public class ProcessResult {
+	/**
+	 * Status of a process' execution.
+	 */
+	public static enum Status {
+		/**
+		 * The script was found and launched properly. It may still have exited
+		 * with a non-zero {@link #exitCode}.
+		 */
+		OK,
+
+		/** The script was not found on disk and thus could not be launched. */
+		NOT_PRESENT,
+
+		/**
+		 * The script was found but could not be launched since it was not
+		 * supported by the current {@link FS}.
+		 */
+		NOT_SUPPORTED;
+	}
+
+	/** The exit code of the process. */
+	private final int exitCode;
+
+	/** Status of the process' execution. */
+	private final Status status;
+
+	/**
+	 * Instantiates a process result with the given status and an exit code of
+	 * <code>-1</code>.
+	 *
+	 * @param status
+	 *            Status describing the execution of the external process.
+	 */
+	public ProcessResult(Status status) {
+		this(-1, status);
+	}
+
+	/**
+	 * @param exitCode
+	 *            Exit code of the process.
+	 * @param status
+	 *            Status describing the execution of the external process.
+	 */
+	public ProcessResult(int exitCode, Status status) {
+		this.exitCode = exitCode;
+		this.status = status;
+	}
+
+	/**
+	 * @return The exit code of the process.
+	 */
+	public int getExitCode() {
+		return exitCode;
+	}
+
+	/**
+	 * @return The status of the process' execution.
+	 */
+	public Status getStatus() {
+		return status;
+	}
+}